C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 38, member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139974 SLC38A6 9606 + 14:60981114-61083733 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267488 SLC38A6-001 60981162-61052630 protein_coding
  ENST00000354886 SLC38A6-201 60981114-61083712 protein_coding
  ENST00000451406 SLC38A6-003 60981293-61083729 protein_coding
  ENST00000491344 SLC38A6-004 60981277-61083729 nonsense_mediated_decay
  ENST00000524402 SLC38A6-010 60982196-61037683 nonsense_mediated_decay
  ENST00000525585 SLC38A6-007 60982544-60987590 retained_intron
  ENST00000525723 SLC38A6-002 60981226-61083733 nonsense_mediated_decay
  ENST00000526105 SLC38A6-011 60982365-61037118 protein_coding
  ENST00000526539 SLC38A6-015 61046107-61083633 nonsense_mediated_decay
  ENST00000527591 SLC38A6-005 60981437-61052445 nonsense_mediated_decay
  ENST00000528350 SLC38A6-012 60982557-61043208 nonsense_mediated_decay
  ENST00000529212 SLC38A6-014 61043150-61052461 protein_coding
  ENST00000529345 SLC38A6-006 60981444-61083732 nonsense_mediated_decay
  ENST00000532148 SLC38A6-009 60981237-61002236 processed_transcript
  ENST00000533744 SLC38A6-013 60982557-61046072 protein_coding
  ENST00000534758 SLC38A6-008 61019536-61031039 protein_coding
  ENST00000554072 SLC38A6-016 60984764-61034299 retained_intron
  ENST00000554304 SLC38A6-019 60981233-61004637 processed_transcript
  ENST00000554498 SLC38A6-018 61051886-61052464 retained_intron
  ENST00000556938 SLC38A6-017 61051815-61052459 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastLungPlacentaENST00000267488ENST00000354886ENST00000554304
Transcript ID Bladder Breast Lung Placenta
ENST00000267488 N/A N/A N/A 1.722±0.09
ENST00000354886 N/A 3.681±0.00 1.874±0.00 N/A
ENST00000554304 10.913±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SK CIL_0006SK_0002 CGP 14:60734742-60981358
CIL_00035S CIL_00035S_0002 CGP 14:60971451-61083733
CIL_0006SI CIL_0006SI_0002 CGP 14:60981114-61550976

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006814 IEA sodium ion transport
GO:0006865 IEA amino acid transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054312 slc38a6 solute carrier family 38, member 6 protein_coding Danio_rerio
ENSMUSG00000044712 Slc38a6 solute carrier family 38, member 6 protein_coding Mus_musculus

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