C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small EDRK-rich factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140264 SERF2 9606 + 15:43777087-43802589 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249786 SERF2-002 43791842-43794595 protein_coding
  ENST00000339624 SERF2-005 43792347-43794046 protein_coding
  ENST00000381359 SERF2-001 43777100-43794595 protein_coding
  ENST00000402131 SERF2-006 43792368-43793975 protein_coding
  ENST00000403425 SERF2-007 43792368-43794046 protein_coding
  ENST00000409291 SERF2-013 43792347-43800279 protein_coding
  ENST00000409614 SERF2-009 43792839-43794046 protein_coding
  ENST00000409617 SERF2-016 43792354-43801873 nonsense_mediated_decay
  ENST00000409646 SERF2-014 43792330-43799850 protein_coding
  ENST00000409960 SERF2-011 43792330-43794444 protein_coding
  ENST00000430901 SERF2-015 43792377-43799007 protein_coding
  ENST00000445816 SERF2-003 43792337-43796089 nonsense_mediated_decay
  ENST00000448830 SERF2-010 43792354-43802589 nonsense_mediated_decay
  ENST00000474290 SERF2-012 43777087-43778116 processed_transcript
  ENST00000475927 SERF2-008 43792368-43793422 retained_intron
  ENST00000486144 SERF2-004 43792330-43793950 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000249786ENST00000339624ENST00000403425ENST00000409614ENST00000409617ENST00000445816
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000249786 N/A N/A 6.860±0.00 17.829±0.00 N/A N/A 6.829±0.00 N/A N/A N/A N/A N/A N/A
ENST00000339624 323.539±0.00 781.160±0.00 N/A N/A 703.065±0.00 505.950±0.00 213.361±0.00 N/A 559.589±0.00 N/A N/A N/A 609.444±0.00
ENST00000403425 N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.536±0.00 N/A N/A N/A
ENST00000409614 N/A 377.122±0.00 N/A 231.726±0.00 382.463±0.00 476.739±0.00 179.720±0.00 728.009±0.00 380.782±0.00 113.294±0.00 904.547±0.00 1017.150±52.52 566.491±0.00
ENST00000409617 123.908±0.00 N/A N/A 120.203±0.00 N/A N/A N/A N/A N/A 123.533±0.00 438.949±0.00 N/A N/A
ENST00000445816 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.627±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693
CIL_00067X CIL_00067X_0001 CGP 15:43746392-43777543

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000074884 Serf2 small EDRK-rich factor 2 protein_coding Mus_musculus

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