C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CKLF-like MARVEL transmembrane domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140931 CMTM3 9606 + 16:66603874-66613892 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361909 CMTM3-004 66604276-66613892 protein_coding
  ENST00000424011 CMTM3-001 66604032-66613892 protein_coding
  ENST00000460097 CMTM3-002 66604310-66613892 protein_coding
  ENST00000562357 CMTM3-012 66604100-66609498 protein_coding
  ENST00000562707 CMTM3-008 66604157-66612701 protein_coding
  ENST00000563672 CMTM3-007 66603874-66609480 protein_coding
  ENST00000564060 CMTM3-011 66604732-66612934 protein_coding
  ENST00000564247 CMTM3-016 66609372-66613455 retained_intron
  ENST00000565003 CMTM3-010 66604895-66611061 protein_coding
  ENST00000565666 CMTM3-014 66604341-66610060 protein_coding
  ENST00000565922 CMTM3-017 66604732-66613478 protein_coding
  ENST00000566121 CMTM3-009 66605521-66612760 protein_coding
  ENST00000566756 CMTM3-005 66604741-66613849 nonsense_mediated_decay
  ENST00000567572 CMTM3-006 66604664-66613880 protein_coding
  ENST00000568477 CMTM3-018 66605273-66612768 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361909ENST00000424011ENST00000562707ENST00000564060ENST00000564247ENST00000565922ENST00000566121ENST00000566756ENST00000567572
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361909 N/A N/A N/A N/A N/A 0.228±0.00 N/A N/A N/A 0.293±0.00 N/A N/A N/A N/A
ENST00000424011 N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562707 N/A N/A 1.065±0.00 N/A N/A 1.459±0.00 N/A N/A N/A 1.953±0.00 N/A N/A N/A N/A
ENST00000564060 N/A N/A 0.398±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564247 9.988±0.00 N/A N/A N/A 6.910±0.00 5.627±0.00 0.175±0.00 3.089±0.00 0.711±0.00 N/A 0.425±0.00 10.502±0.00 14.273±2.72 11.975±0.00
ENST00000565922 N/A 11.899±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.539±0.00 36.739±0.00 74.881±0.00 77.604±0.00
ENST00000566121 N/A N/A N/A 1.395±0.00 N/A N/A N/A N/A N/A N/A N/A 2.403±0.00 N/A N/A
ENST00000566756 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.392±0.00 N/A N/A N/A N/A
ENST00000567572 12.717±0.00 5.514±0.00 N/A 1.801±0.00 5.895±0.00 3.302±0.00 5.919±0.00 5.558±0.00 1.484±0.00 17.181±0.00 N/A 15.364±6.17 23.006±5.86 15.588±10.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IT CIL_0004IT_0001 CGP 16:66579448-66613892
CIL_0007WN CIL_0007WN_0001 VISTA 16:66603173-67205657
CIL_0003BR CIL_0003BR_0002 CGP 16:66603874-66696707

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005125 IEA cytokine activity
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0006935 IEA chemotaxis
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0031965 IEA nuclear membrane
GO:0050861 IEA positive regulation of B cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008811 cmtm3 CKLF-like MARVEL transmembrane domain containing 3 protein_coding Danio_rerio
ENSMUSG00000031875 Cmtm3 CKLF-like MARVEL transmembrane domain containing 3 protein_coding Mus_musculus

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