C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140988 RPS2 9606 - 16:1962052-1964860 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343262 RPS2-001 1962052-1964860 protein_coding
  ENST00000526522 RPS2-006 1962060-1964803 protein_coding
  ENST00000526586 RPS2-015 1962061-1963256 protein_coding
  ENST00000526908 RPS2-010 1962643-1964538 retained_intron
  ENST00000527109 RPS2-005 1962061-1964630 retained_intron
  ENST00000527302 RPS2-007 1962552-1964806 protein_coding
  ENST00000527826 RPS2-009 1962950-1964805 retained_intron
  ENST00000527871 RPS2-004 1962061-1964631 retained_intron
  ENST00000529806 RPS2-008 1962079-1964812 protein_coding
  ENST00000530225 RPS2-017 1962061-1964631 protein_coding
  ENST00000531065 RPS2-003 1962061-1964631 retained_intron
  ENST00000532746 RPS2-012 1962061-1964367 nonsense_mediated_decay
  ENST00000533161 RPS2-002 1962061-1964813 retained_intron
  ENST00000533186 RPS2-013 1962061-1964356 protein_coding
  ENST00000533872 RPS2-011 1962061-1964581 retained_intron
  ENST00000534461 RPS2-014 1962374-1964365 retained_intron
  ENST00000563194 RPS2-018 1963212-1964841 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343262ENST00000527302ENST00000533186
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343262 567.815±0.00 559.664±0.00 8.210±0.00 58.249±37.40 214.098±166.94 306.895±268.09 60.631±55.84 150.683±88.96 157.880±115.46 276.322±251.58 415.320±365.02 694.655±508.98 977.007±356.19 185.617±146.15
ENST00000527302 N/A N/A 7.203±0.00 N/A 14.217±0.00 20.844±0.00 4.558±0.00 N/A N/A 11.892±0.00 23.780±0.00 26.070±0.00 N/A N/A
ENST00000533186 N/A 212.162±0.00 12.571±0.00 35.740±0.00 48.423±0.00 101.415±0.00 11.800±0.00 27.160±0.00 88.498±0.00 50.318±0.00 117.651±0.00 264.867±145.65 474.662±120.26 87.229±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0003729 IDA mRNA binding
GO:0003735 IEA:IDA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017134 IPI fibroblast growth factor binding
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0019899 IPI enzyme binding
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0051347 IDA positive regulation of transferase activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077291 rps2 ribosomal protein S2 protein_coding Danio_rerio
ENSMUSG00000095406 Gm18025 predicted gene, 18025 protein_coding Mus_musculus
ENSMUSG00000095427 Rps2-ps6 ribosomal protein S2, pseudogene 6 protein_coding Mus_musculus

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