C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphatidylcholine transfer protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141179 PCTP 9606 + 17:55750979-55842830 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000268896 PCTP-001 55750979-55777374 protein_coding
  ENST00000325214 PCTP-004 55751400-55777374 protein_coding
  ENST00000417982 PCTP-003 55751105-55777373 nonsense_mediated_decay
  ENST00000571489 PCTP-005 55768847-55777387 retained_intron
  ENST00000572536 PCTP-010 55773736-55823090 protein_coding
  ENST00000573500 PCTP-008 55751094-55823090 protein_coding
  ENST00000576183 PCTP-006 55751061-55777368 protein_coding
  ENST00000576221 PCTP-009 55771177-55842830 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000268896ENST00000325214ENST00000417982ENST00000571489ENST00000573500ENST00000576183ENST00000576221
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000268896 7.773±0.00 6.924±0.00 3.239±0.00 0.910±0.00 4.196±2.39 7.214±2.87 2.200±1.40 16.686±0.39 14.399±12.83 1.453±0.76 1.784±0.19 6.577±2.39 19.064±5.18 8.662±1.45
ENST00000325214 2.489±0.00 N/A N/A 0.523±0.00 N/A N/A 0.384±0.00 N/A 2.080±0.00 2.333±1.31 N/A 1.409±0.00 4.824±0.00 3.565±0.00
ENST00000417982 N/A N/A N/A 0.371±0.00 N/A N/A N/A N/A N/A 0.607±0.00 N/A N/A N/A N/A
ENST00000571489 N/A N/A N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A N/A 0.502±0.00 N/A N/A
ENST00000573500 N/A N/A N/A 0.741±0.06 0.685±0.00 1.961±0.00 1.701±0.00 3.651±0.00 N/A 1.056±0.00 1.076±0.00 11.816±0.00 22.501±0.00 13.633±0.00
ENST00000576183 N/A N/A N/A 0.428±0.00 N/A 0.587±0.00 0.209±0.00 N/A N/A 0.833±0.06 0.574±0.14 0.950±0.24 N/A 1.765±0.00
ENST00000576221 N/A N/A N/A 1.723±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005829 NAS cytosol
GO:0006869 NAS lipid transport
GO:0008203 IEA cholesterol metabolic process
GO:0008289 IEA lipid binding
GO:0008525 TAS phosphatidylcholine transporter activity
GO:0015914 IDA phospholipid transport
GO:0031210 IDA phosphatidylcholine binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073985 pctp phosphatidylcholine transfer protein protein_coding Danio_rerio
ENSMUSG00000020553 Pctp phosphatidylcholine transfer protein protein_coding Mus_musculus

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