C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 46
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141294 LRRC46 9606 + 17:47831627-47837713 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269025 LRRC46-001 47831627-47837713 protein_coding
  ENST00000579742 LRRC46-003 47831634-47836062 nonsense_mediated_decay
  ENST00000579971 LRRC46-004 47831691-47836100 nonsense_mediated_decay
  ENST00000584580 LRRC46-002 47831723-47837228 nonsense_mediated_decay
  ENST00000584809 LRRC46-005 47832171-47835248 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyOvaryTestisENST00000269025ENST00000579971ENST00000584809
Transcript ID Bladder Kidney Ovary Testis
ENST00000269025 N/A N/A 10.328±0.00 16.370±8.57
ENST00000579971 N/A N/A N/A 47.042±0.00
ENST00000584809 2.783±0.00 1.876±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000020878 Lrrc46 leucine rich repeat containing 46 protein_coding Mus_musculus

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