C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: slingshot protein phosphatase 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141298 SSH2 9606 - 17:29625938-29930276 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269033 SSH2-001 29625938-29930152 protein_coding
  ENST00000324677 SSH2-005 29673914-29761390 processed_transcript
  ENST00000394848 SSH2-002 29647694-29930000 retained_intron
  ENST00000540801 SSH2-003 29630749-29930093 protein_coding
  ENST00000577483 SSH2-006 29675830-29930107 retained_intron
  ENST00000577991 SSH2-007 29630602-29631484 protein_coding
  ENST00000578411 SSH2-010 29793616-29930167 retained_intron
  ENST00000579040 SSH2-004 29673901-29930173 nonsense_mediated_decay
  ENST00000579954 SSH2-009 29928282-29930062 protein_coding
  ENST00000582084 SSH2-008 29925217-29930276 protein_coding
  ENST00000590153 SSH2-011 29925277-29930228 protein_coding
  ENST00000592397 SSH2-012 29677719-29839142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269033ENST00000324677ENST00000394848ENST00000540801
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269033 1.035±0.00 N/A N/A 3.828±0.00 N/A 0.523±0.00 N/A 0.303±0.00 N/A 5.944±0.00 1.710±1.12 1.572±0.63 4.402±2.26
ENST00000324677 N/A N/A N/A N/A N/A N/A 1.635±0.00 N/A N/A N/A N/A N/A N/A
ENST00000394848 N/A N/A N/A N/A N/A 2.189±0.00 N/A 2.509±0.00 7.392±0.00 N/A N/A N/A N/A
ENST00000540801 N/A 0.915±0.00 1.480±0.00 1.969±0.00 1.534±0.00 1.040±0.00 N/A 1.403±0.00 2.246±0.18 3.325±0.00 2.211±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BZ CIL_0009BZ_0001 VISTA 17:29367684-29969856
CIL_000873 CIL_000873_0001 VISTA 17:29367702-29969870

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003779 IDA actin binding
GO:0004721 IDA phosphoprotein phosphatase activity
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005615 IDA extracellular space
GO:0005737 IBA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006470 IMP:IEA protein dephosphorylation
GO:0008064 IBA regulation of actin polymerization or depolymerization
GO:0008138 IBA:IEA protein tyrosine/serine/threonine phosphatase activity
GO:0010591 IBA regulation of lamellipodium assembly
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0030036 IMP actin cytoskeleton organization
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0050770 IBA regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077623 ssh2b slingshot homolog 2b (Drosophila) protein_coding Danio_rerio
ENSDARG00000088440 ssh2a slingshot homolog 2a (Drosophila) protein_coding Danio_rerio
ENSMUSG00000037926 Ssh2 slingshot homolog 2 (Drosophila) protein_coding Mus_musculus

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