C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: slowmo homolog 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141391 SLMO1 9606 + 18:12407896-12432238 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336990 SLMO1-001 12407896-12432235 protein_coding
  ENST00000440960 SLMO1-201 12407896-12432233 protein_coding
  ENST00000587735 SLMO1-003 12421286-12432238 protein_coding
  ENST00000587862 SLMO1-008 12420017-12429364 protein_coding
  ENST00000588729 SLMO1-004 12407945-12427106 protein_coding
  ENST00000589565 SLMO1-006 12407948-12431424 nonsense_mediated_decay
  ENST00000589952 SLMO1-007 12419892-12427322 protein_coding
  ENST00000590956 SLMO1-005 12407896-12431463 protein_coding
  ENST00000592149 SLMO1-002 12419933-12432238 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336990ENST00000440960ENST00000587735ENST00000587862ENST00000588729ENST00000589565ENST00000589952ENST00000590956ENST00000592149
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336990 N/A N/A N/A N/A N/A N/A 0.039±0.00 0.124±0.00 N/A N/A 0.683±0.00 0.141±0.00 N/A
ENST00000440960 N/A N/A N/A N/A 0.368±0.00 N/A N/A 0.017±0.00 N/A 0.184±0.00 1.228±0.00 0.469±0.09 N/A
ENST00000587735 N/A N/A 0.518±0.31 0.141±0.00 N/A 0.046±0.00 N/A 0.143±0.00 N/A N/A 1.131±0.00 N/A N/A
ENST00000587862 N/A N/A N/A N/A 0.022±0.00 N/A 0.072±0.00 N/A N/A N/A N/A N/A N/A
ENST00000588729 0.380±0.00 N/A N/A 0.362±0.00 N/A 0.157±0.00 0.419±0.00 N/A 0.685±0.00 0.268±0.00 1.962±0.00 0.487±0.00 1.069±0.00
ENST00000589565 N/A N/A 0.772±0.00 0.318±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589952 N/A N/A N/A N/A N/A N/A N/A 0.352±0.00 N/A N/A 1.193±0.00 N/A N/A
ENST00000590956 N/A 0.551±0.00 0.309±0.00 N/A 0.283±0.24 N/A 0.113±0.00 0.105±0.00 N/A N/A 1.316±0.30 N/A 0.703±0.20
ENST00000592149 N/A N/A N/A 0.293±0.00 N/A N/A N/A N/A 0.170±0.00 N/A 0.435±0.00 0.125±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZP CIL_0007ZP_0001 VISTA 18:11977697-12581651
CIL_0005DU CIL_0005DU_0001 CGP 18:12328944-12432238
CIL_00010Z CIL_00010Z_0001 CGP 18:12407896-12658134

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion
GO:0005758 IBA mitochondrial intermembrane space
GO:0015914 IBA phospholipid transport
GO:1990050 IBA phosphatidic acid transporter activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055288 slmo1 slowmo homolog 1 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000024530 Slmo1 slowmo homolog 1 (Drosophila) protein_coding Mus_musculus

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