C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 13 (sodium-dependent citrate transporter), member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141485 SLC13A5 9606 - 17:6684713-6713567 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000293800 SLC13A5-004 6684723-6713369 protein_coding
  ENST00000381074 SLC13A5-003 6686080-6713366 protein_coding
  ENST00000433363 SLC13A5-001 6684713-6713567 protein_coding
  ENST00000570687 SLC13A5-012 6687354-6690884 protein_coding
  ENST00000572094 SLC13A5-014 6695817-6713359 nonsense_mediated_decay
  ENST00000572352 SLC13A5-013 6703073-6713369 protein_coding
  ENST00000572727 SLC13A5-011 6689962-6695889 protein_coding
  ENST00000573648 SLC13A5-002 6686097-6713377 protein_coding
  ENST00000574580 SLC13A5-007 6684723-6690082 retained_intron
  ENST00000574824 SLC13A5-005 6695408-6705557 retained_intron
  ENST00000575230 SLC13A5-008 6704036-6713369 nonsense_mediated_decay
  ENST00000576323 SLC13A5-010 6703881-6713371 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000293800ENST00000433363ENST00000572352ENST00000574580ENST00000574824
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000293800 0.307±0.00 N/A 0.020±0.00 N/A 0.019±0.00 0.096±0.00 N/A N/A 142.393±0.00 N/A N/A 0.093±0.00 0.023±0.00 N/A
ENST00000433363 N/A N/A N/A 1.107±0.00 N/A N/A N/A 22.573±0.00 42.402±0.00 N/A N/A 0.861±0.00 N/A 0.938±0.59
ENST00000572352 N/A N/A N/A 2.518±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A
ENST00000574580 0.067±0.00 0.260±0.00 N/A N/A 0.053±0.04 0.070±0.00 0.081±0.00 0.076±0.00 0.010±0.00 0.050±0.00 0.012±0.00 0.061±0.03 0.011±0.00 0.603±0.00
ENST00000574824 0.087±0.00 0.417±0.00 N/A N/A 0.163±0.00 0.135±0.12 0.044±0.02 0.241±0.00 N/A 0.023±0.00 0.056±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000HE CIL_0000HE_0001 CGP 17:6684713-6775647

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005343 IEA organic acid:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006842 IEA tricarboxylic acid transport
GO:0015137 IEA citrate transmembrane transporter activity
GO:0015141 IEA succinate transmembrane transporter activity
GO:0015142 IEA tricarboxylic acid transmembrane transporter activity
GO:0015744 IEA succinate transport
GO:0015746 IEA citrate transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0035674 IEA tricarboxylic acid transmembrane transport
GO:0055085 TAS:IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039999 slc13a5b solute carrier family 13 (sodium-dependent citrate transporter), member 5b protein_coding Danio_rerio
ENSDARG00000077691 slc13a5a info solute carrier family 13 (sodium-dependent citrate transporter), member 5a protein_coding Danio_rerio
ENSMUSG00000020805 Slc13a5 solute carrier family 13 (sodium-dependent citrate transporter), member 5 protein_coding Mus_musculus

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