C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB40B, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141542 RAB40B 9606 - 17:82654973-82698728 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269347 RAB40B-002 82657067-82698687 protein_coding
  ENST00000538809 RAB40B-005 82657911-82698662 protein_coding
  ENST00000570676 RAB40B-008 82657793-82664895 retained_intron
  ENST00000571554 RAB40B-007 82661011-82696870 processed_transcript
  ENST00000571880 RAB40B-012 82655037-82656881 processed_transcript
  ENST00000571995 RAB40B-001 82654973-82698728 protein_coding
  ENST00000572603 RAB40B-006 82661081-82698654 processed_transcript
  ENST00000573395 RAB40B-011 82657977-82658849 retained_intron
  ENST00000574132 RAB40B-009 82657706-82659759 retained_intron
  ENST00000576148 RAB40B-010 82657915-82661031 protein_coding
  ENST00000576359 RAB40B-003 82657068-82659589 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000269347ENST00000538809ENST00000571995ENST00000574132ENST00000576359
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000269347 2.023±0.00 1.695±0.00 N/A 15.962±0.41 3.103±2.81 2.779±1.32 4.680±3.22 5.892±4.41 1.537±0.00 1.382±0.69 3.119±0.06 3.827±1.40 1.465±0.61 3.993±1.88
ENST00000538809 N/A N/A 3.003±0.00 31.907±0.00 0.551±0.00 2.776±0.00 3.762±0.00 N/A 4.212±0.00 1.636±0.00 16.996±0.00 3.550±0.00 N/A N/A
ENST00000571995 N/A 0.905±0.00 N/A 2.257±0.00 1.193±0.00 N/A N/A N/A 0.639±0.00 N/A 0.775±0.00 1.746±0.78 0.477±0.16 N/A
ENST00000574132 N/A N/A N/A 21.825±0.00 0.381±0.00 N/A N/A N/A N/A 3.605±0.00 3.446±0.00 2.593±0.00 N/A N/A
ENST00000576359 N/A N/A N/A 3.989±0.00 N/A N/A N/A 1.057±0.00 0.504±0.00 N/A N/A 6.946±0.00 N/A 1.546±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IW CIL_0000IW_0001 CGP 17:82614562-82698728
CIL_0000IX CIL_0000IX_0001 CGP 17:82654973-82730328

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005886 IEA plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016567 IEA protein ubiquitination
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042410 rab40b RAB40B, member RAS oncogene family protein_coding Danio_rerio
ENSMUSG00000025170 Rab40b Rab40B, member RAS oncogene family protein_coding Mus_musculus

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