C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 65
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141569 TRIM65 9606 - 17:75880335-75897003 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269383 TRIM65-001 75888960-75897003 protein_coding
  ENST00000540128 TRIM65-005 75891180-75896911 protein_coding
  ENST00000540812 TRIM65-004 75892583-75896640 retained_intron
  ENST00000543309 TRIM65-003 75891023-75896558 protein_coding
  ENST00000591668 TRIM65-007 75880335-75892303 protein_coding
  ENST00000592642 TRIM65-008 75880444-75892149 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000269383ENST00000540128ENST00000543309
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000269383 4.186±0.00 4.093±0.00 0.248±0.00 0.931±0.00 2.725±0.00 1.510±1.39 1.051±0.00 2.556±0.00 1.712±0.00 1.413±0.86 1.380±1.22 4.251±3.09 2.265±0.48
ENST00000540128 N/A N/A N/A 1.546±0.00 1.651±0.00 0.789±0.00 N/A N/A N/A N/A N/A 1.336±0.00 N/A
ENST00000543309 N/A N/A N/A N/A 1.995±0.00 N/A N/A N/A N/A N/A 1.304±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WF CIL_0008WF_0001 VISTA 17:75822026-76422503
CIL_00078V CIL_00078V_0001 CGP 17:75874161-75897003
CIL_0003KG CIL_0003KG_0002 CGP 17:75880335-75905413

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077098 trim65 tripartite motif containing 65 protein_coding Danio_rerio
ENSMUSG00000054517 Trim65 tripartite motif-containing 65 protein_coding Mus_musculus

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