C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin polyglutamylase complex subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141933 TPGS1 9606 + 19:507299-519654 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359315 TPGS1-001 507299-519654 protein_coding
  ENST00000588278 TPGS1-002 507500-510372 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359315ENST00000588278
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359315 8.888±0.00 11.517±0.00 0.957±0.00 3.780±3.13 10.637±0.00 3.558±3.04 2.832±2.73 13.418±0.00 5.182±4.66 4.861±4.10 5.772±0.00 5.862±5.26 7.415±3.27 3.730±1.96
ENST00000588278 N/A 0.978±0.00 0.056±0.00 0.269±0.15 0.341±0.04 0.109±0.00 0.197±0.09 0.165±0.00 0.141±0.00 0.256±0.00 N/A 0.376±0.06 0.159±0.00 0.535±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_00043J CIL_00043J_0001 CGP 19:489176-519654
CIL_0007DQ CIL_0007DQ_0001 CGP 19:507299-542092

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005874 IEA microtubule
GO:0007268 IEA synaptic transmission
GO:0007275 IEA multicellular organismal development
GO:0007288 IEA sperm axoneme assembly
GO:0008017 IEA microtubule binding
GO:0015631 IEA tubulin binding
GO:0018095 IEA protein polyglutamylation
GO:0030534 IEA adult behavior
GO:0031514 IEA motile cilium
GO:0051648 IEA vesicle localization
GO:0070740 IEA tubulin-glutamic acid ligase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027547 TPGS1 (1 of 2) tubulin polyglutamylase complex subunit 1 protein_coding Danio_rerio
ENSDARG00000074879 CR774186.2 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000020308 Tpgs1 tubulin polyglutamylase complex subunit 1 protein_coding Mus_musculus

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