C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142207 URB1 9606 - 21:32311018-32393026 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382751 URB1-001 32311018-32393026 protein_coding
  ENST00000480196 URB1-002 32333113-32334334 retained_intron
  ENST00000492603 URB1-003 32334209-32335630 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382751
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382751 3.152±0.00 3.013±0.00 1.972±1.24 3.967±2.08 1.405±1.05 1.682±1.11 1.653±0.66 1.116±0.28 2.003±0.00 3.004±2.25 7.365±2.12 1.985±0.70 4.024±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001I6 CIL_0001I6_0001 CGP 21:32268219-32314784
CIL_0001FB CIL_0001FB_0001 CGP 21:32291813-32393026
CIL_0003KX CIL_0003KX_0001 CGP 21:32311018-32515397

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005730 NAS nucleolus
GO:0008150 ND biological_process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060308 URB1 (1 of 2) URB1 ribosome biogenesis 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000087043 URB1 (2 of 2) URB1 ribosome biogenesis 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000039929 Urb1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) protein_coding Mus_musculus

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