C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L13a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142541 RPL13A 9606 + 19:49487554-49492308 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000391857 RPL13A-001 49487554-49492308 protein_coding
  ENST00000467825 RPL13A-009 49487634-49491843 protein_coding
  ENST00000468655 RPL13A-011 49490645-49491226 retained_intron
  ENST00000472481 RPL13A-007 49487608-49491228 retained_intron
  ENST00000474171 RPL13A-010 49490529-49491757 retained_intron
  ENST00000476268 RPL13A-003 49489850-49491811 retained_intron
  ENST00000476300 RPL13A-012 49490840-49491814 retained_intron
  ENST00000477613 RPL13A-008 49487625-49491889 processed_transcript
  ENST00000479992 RPL13A-006 49487615-49491861 retained_intron
  ENST00000484279 RPL13A-004 49487608-49491807 nonsense_mediated_decay
  ENST00000486930 RPL13A-005 49487616-49490851 retained_intron
  ENST00000488946 RPL13A-002 49487608-49492305 retained_intron
  ENST00000621674 RPL13A-201 49487554-49492301 protein_coding
  ENST00000624069 RPL13A-013 49487603-49492308 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000391857ENST00000467825ENST00000477613ENST00000484279ENST00000621674ENST00000624069
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000391857 290.475±0.00 267.592±0.00 47.481±0.00 134.487±0.00 237.880±9.06 200.389±0.00 64.125±0.00 134.881±0.00 205.549±0.00 145.713±0.00 126.833±0.00 744.287±489.30 729.861±151.12 97.819±26.09
ENST00000467825 N/A N/A N/A 107.519±0.00 N/A 436.415±0.00 287.203±0.00 328.102±0.00 444.903±0.00 1379.190±0.00 709.367±0.00 1236.400±0.00 641.981±84.40 164.277±0.00
ENST00000477613 850.600±0.00 897.298±0.00 N/A 62.984±0.00 755.718±0.00 664.961±0.00 N/A N/A N/A N/A 139.655±0.00 1967.370±0.00 1018.371±142.80 394.448±0.00
ENST00000484279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 130.490±0.00
ENST00000621674 N/A 232.125±0.00 43.361±0.00 38.835±0.00 N/A 140.593±97.82 N/A 93.727±6.87 87.499±0.00 N/A 66.679±0.00 N/A N/A 114.002±0.00
ENST00000624069 N/A 356.015±0.00 N/A 52.507±0.00 N/A 260.738±0.00 127.100±0.00 239.257±0.00 117.648±0.00 493.871±0.00 130.357±0.00 N/A N/A 93.503±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015934 TAS:IEA large ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0017148 IDA negative regulation of translation
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0071346 IDA cellular response to interferon-gamma
GO:0097452 IDA GAIT complex
GO:1901194 IDA negative regulation of formation of translation preinitiation complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044093 rpl13a ribosomal protein L13a protein_coding Danio_rerio
ENSMUSG00000062083 Rpl13a-ps1 ribosomal protein 13A, pseudogene 1 protein_coding Mus_musculus
ENSMUSG00000074129 Rpl13a ribosomal protein L13A protein_coding Mus_musculus

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