C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ficolin (collagen/fibrinogen domain containing) 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142748 FCN3 9606 - 1:27369112-27374824 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000270879 FCN3-001 27369112-27374824 protein_coding
  ENST00000354982 FCN3-002 27369112-27374824 protein_coding
  ENST00000481748 FCN3-003 27373530-27374805 retained_intron
  ENST00000498393 FCN3-004 27370473-27373678 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000270879ENST00000354982ENST00000481748
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000270879 75.433±0.00 5.510±0.00 N/A N/A 3.194±0.00 2.914±0.00 3.803±3.26 23.723±5.33 210.126±0.00 370.979±360.37 1.318±0.00 0.918±0.48 12.140±6.93 2.579±0.00
ENST00000354982 11.244±0.00 N/A 0.883±0.00 1.131±0.00 0.416±0.00 1.168±0.00 0.240±0.00 8.023±1.05 N/A 124.918±108.43 1.965±0.00 0.274±0.07 7.994±2.23 0.386±0.06
ENST00000481748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0001 VISTA 1:27203963-27805666

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001867 IDA complement activation, lectin pathway
GO:0005515 IPI protein binding
GO:0005576 NAS extracellular region
GO:0005581 IEA collagen trimer
GO:0006956 TAS complement activation
GO:0030246 IEA carbohydrate binding
GO:0045087 TAS innate immune response
GO:0072562 IDA blood microparticle

Homologs

No Homologs available.

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