C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal RNA adenine dimethylase domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143303 RRNAD1 9606 + 1:156728442-156736960 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000368216 RRNAD1-001 156728475-156736949 protein_coding
  ENST00000368218 RRNAD1-007 156728442-156736949 protein_coding
  ENST00000462397 RRNAD1-004 156733472-156734141 processed_transcript
  ENST00000476229 RRNAD1-003 156732025-156736949 protein_coding
  ENST00000481920 RRNAD1-006 156736158-156736902 processed_transcript
  ENST00000484742 RRNAD1-002 156729516-156733492 protein_coding
  ENST00000497515 RRNAD1-005 156735622-156736960 processed_transcript
  ENST00000517871 RRNAD1-013 156732252-156733649 retained_intron
  ENST00000519086 RRNAD1-009 156728949-156734470 protein_coding
  ENST00000522237 RRNAD1-011 156732385-156735800 protein_coding
  ENST00000524343 RRNAD1-008 156728960-156732994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000368216ENST00000368218ENST00000484742ENST00000517871ENST00000519086
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000368216 5.230±0.00 6.283±0.00 1.265±0.00 7.142±0.00 5.059±0.00 6.898±0.00 2.030±0.00 7.576±0.00 3.758±0.00 6.340±0.00 2.737±2.21 12.369±1.67 7.560±1.93
ENST00000368218 N/A 7.873±0.00 N/A N/A 3.840±0.00 N/A 3.306±0.00 N/A 2.723±0.00 N/A N/A N/A N/A
ENST00000484742 N/A N/A N/A N/A N/A N/A 0.757±0.00 3.780±0.00 N/A N/A N/A N/A N/A
ENST00000517871 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.846±0.00 N/A N/A N/A
ENST00000519086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.630±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0001 VISTA 1:156202708-156805613
CIL_000850 CIL_000850_0001 VISTA 1:156360457-156965492
CIL_0000CW CIL_0000CW_0002 CGP 1:156721891-156736960

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000179 IEA rRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0031167 IEA rRNA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031001 rrnad1 ribosomal RNA adenine dimethylase domain containing 1 protein_coding Danio_rerio
ENSDARG00000089033 rrnad1 ribosomal RNA adenine dimethylase domain containing 1 protein_coding Danio_rerio
ENSMUSG00000004896 Rrnad1 ribosomal RNA adenine dimethylase domain containing 1 protein_coding Mus_musculus

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