C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: centrosomal protein 170kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143702 CEP170 9606 - 1:243124428-243255406 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336415 CEP170-004 243125164-243200814 protein_coding
  ENST00000366542 CEP170-003 243124428-243255050 protein_coding
  ENST00000366543 CEP170-002 243124428-243255321 protein_coding
  ENST00000366544 CEP170-001 243124428-243255321 protein_coding
  ENST00000413359 CEP170-026 243129360-243164494 protein_coding
  ENST00000439296 CEP170-027 243126409-243136304 retained_intron
  ENST00000451408 CEP170-024 243164919-243166572 processed_transcript
  ENST00000461671 CEP170-008 243169694-243186280 nonsense_mediated_decay
  ENST00000464936 CEP170-009 243129373-243163340 protein_coding
  ENST00000466495 CEP170-014 243125918-243126698 processed_transcript
  ENST00000468254 CEP170-005 243124429-243140363 processed_transcript
  ENST00000468697 CEP170-011 243135752-243140074 retained_intron
  ENST00000469646 CEP170-012 243126684-243128855 processed_transcript
  ENST00000476661 CEP170-013 243125922-243129439 processed_transcript
  ENST00000481987 CEP170-007 243124893-243156821 protein_coding
  ENST00000490813 CEP170-006 243126345-243163318 protein_coding
  ENST00000492145 CEP170-010 243139984-243163310 protein_coding
  ENST00000518289 CEP170-023 243165989-243175188 processed_transcript
  ENST00000521911 CEP170-022 243172811-243186499 retained_intron
  ENST00000522191 CEP170-019 243200614-243254470 protein_coding
  ENST00000522522 CEP170-015 243211213-243255231 retained_intron
  ENST00000522895 CEP170-025 243169440-243186409 protein_coding
  ENST00000522995 CEP170-018 243211895-243255348 protein_coding
  ENST00000523424 CEP170-020 243200777-243253320 protein_coding
  ENST00000523581 CEP170-021 243221555-243255216 retained_intron
  ENST00000619357 CEP170-201 243124429-243255406 protein_coding
  ENST00000621831 CEP170-202 243124429-243255406 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336415ENST00000366542ENST00000366544ENST00000466495ENST00000468254ENST00000481987ENST00000522522ENST00000619357ENST00000621831
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336415 0.399±0.00 0.691±0.00 1.522±0.00 1.904±0.00 1.100±0.00 0.989±0.00 N/A 2.041±0.00 4.588±0.00 1.055±0.00 0.844±0.48 0.437±0.00 N/A
ENST00000366542 N/A N/A 1.746±0.00 N/A N/A N/A 0.319±0.00 N/A N/A 0.348±0.00 0.787±0.00 0.275±0.06 1.932±0.00
ENST00000366544 0.425±0.00 N/A 2.235±0.00 N/A N/A N/A N/A 0.198±0.00 0.680±0.00 N/A N/A 0.650±0.00 N/A
ENST00000466495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.074±0.00
ENST00000468254 N/A N/A 7.332±0.00 N/A N/A N/A N/A N/A N/A N/A 2.786±0.00 N/A N/A
ENST00000481987 N/A 1.161±0.00 N/A N/A N/A N/A 0.454±0.00 N/A N/A N/A N/A 1.109±0.00 5.173±0.00
ENST00000522522 N/A N/A N/A N/A N/A N/A 1.570±0.00 N/A N/A N/A N/A N/A N/A
ENST00000619357 0.320±0.00 N/A 1.945±0.00 N/A 1.040±0.00 0.648±0.20 N/A N/A 2.216±0.00 N/A 1.715±0.00 0.493±0.00 N/A
ENST00000621831 N/A N/A 0.961±0.00 N/A N/A N/A N/A 0.602±0.00 N/A N/A N/A N/A 1.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000L6 CIL_0000L6_0002 CGP 1:242082986-243255406
CIL_0000L3 CIL_0000L3_0002 CGP 1:243124428-243500092

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0005874 IEA microtubule
GO:0031965 IDA nuclear membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006128 cep170a centrosomal protein 170a protein_coding Danio_rerio
ENSDARG00000058892 cep170b centrosomal protein 170b protein_coding Danio_rerio
ENSMUSG00000057335 Cep170 centrosomal protein 170 protein_coding Mus_musculus

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