C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: odd-skipped related transciption factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143867 OSR1 9606 - 2:19351485-19358653 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272223 OSR1-001 19351485-19358653 protein_coding
  ENST00000487581 OSR1-002 19352012-19356912 retained_intron
  ENST00000498844 OSR1-003 19357706-19358623 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272223ENST00000487581
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272223 11.508±0.00 4.245±0.00 N/A 0.255±0.00 3.874±1.83 2.947±1.96 0.918±0.20 0.414±0.34 5.265±5.07 4.770±3.98 0.987±0.61 2.488±1.80 3.551±1.57 10.145±5.88
ENST00000487581 N/A N/A 0.084±0.00 0.096±0.08 0.171±0.05 0.206±0.06 0.164±0.00 0.118±0.00 0.285±0.27 0.154±0.00 N/A 0.093±0.00 N/A 0.338±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YE CIL_0008YE_0001 VISTA 2:19078414-19679654
CIL_0009D2 CIL_0009D2_0001 VISTA 2:19240873-19841999
CIL_0009D5 CIL_0009D5_0001 VISTA 2:19274354-19876457

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0001655 ISS urogenital system development
GO:0001656 IEA metanephros development
GO:0001657 ISS ureteric bud development
GO:0001823 ISS mesonephros development
GO:0002062 ISS chondrocyte differentiation
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007507 ISS heart development
GO:0008406 IEA gonad development
GO:0010628 ISS positive regulation of gene expression
GO:0030154 ISS cell differentiation
GO:0030501 ISS positive regulation of bone mineralization
GO:0030857 ISS negative regulation of epithelial cell differentiation
GO:0035115 ISS embryonic forelimb morphogenesis
GO:0035116 ISS embryonic hindlimb morphogenesis
GO:0036023 ISS embryonic skeletal limb joint morphogenesis
GO:0042474 ISS middle ear morphogenesis
GO:0042476 ISS odontogenesis
GO:0042733 ISS embryonic digit morphogenesis
GO:0043066 ISS negative regulation of apoptotic process
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048389 IEA intermediate mesoderm development
GO:0048793 IMP pronephros development
GO:0048863 ISS stem cell differentiation
GO:0050679 ISS positive regulation of epithelial cell proliferation
GO:0060021 ISS palate development
GO:0060272 ISS embryonic skeletal joint morphogenesis
GO:0071300 IEA cellular response to retinoic acid
GO:0072075 ISS metanephric mesenchyme development
GO:0072111 ISS cell proliferation involved in kidney development
GO:0072133 ISS metanephric mesenchyme morphogenesis
GO:0072143 ISS mesangial cell development
GO:0072162 ISS metanephric mesenchymal cell differentiation
GO:0072166 ISS posterior mesonephric tubule development
GO:0072168 ISS specification of anterior mesonephric tubule identity
GO:0072169 ISS specification of posterior mesonephric tubule identity
GO:0072180 ISS mesonephric duct morphogenesis
GO:0072183 ISS negative regulation of nephron tubule epithelial cell differentiation
GO:0072184 ISS renal vesicle progenitor cell differentiation
GO:0072190 ISS ureter urothelium development
GO:0072207 ISS metanephric epithelium development
GO:0072208 ISS metanephric smooth muscle tissue development
GO:0072234 ISS metanephric nephron tubule development
GO:0072239 ISS metanephric glomerulus vasculature development
GO:0072259 ISS metanephric interstitial fibroblast development
GO:0072268 ISS pattern specification involved in metanephros development
GO:0072498 ISS embryonic skeletal joint development
GO:0090094 ISS metanephric cap mesenchymal cell proliferation involved in metanephros development
GO:2000543 IMP positive regulation of gastrulation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014091 osr1 odd-skipped related 1 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000048387 Osr1 odd-skipped related 1 (Drosophila) protein_coding Mus_musculus

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