C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small nuclear ribonucleoprotein polypeptide G
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143977 SNRPG 9606 - 2:70281362-70293771 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272348 SNRPG-001 70281362-70293771 protein_coding
  ENST00000413456 SNRPG-008 70281507-70293224 protein_coding
  ENST00000429728 SNRPG-006 70281367-70293740 processed_transcript
  ENST00000438261 SNRPG-004 70281505-70293448 protein_coding
  ENST00000449935 SNRPG-009 70281507-70292776 protein_coding
  ENST00000454893 SNRPG-003 70281507-70293711 protein_coding
  ENST00000480370 SNRPG-005 70287808-70293719 retained_intron
  ENST00000482975 SNRPG-002 70281504-70293438 protein_coding
  ENST00000488400 SNRPG-007 70287936-70293730 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272348ENST00000413456ENST00000429728ENST00000449935ENST00000454893ENST00000488400
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272348 22.037±0.00 36.685±0.00 4.621±0.00 13.347±3.98 21.832±5.08 23.691±11.35 12.320±4.39 21.590±1.56 14.989±9.03 13.668±2.92 14.112±3.85 81.470±82.29 87.673±86.47 67.032±3.72
ENST00000413456 N/A N/A N/A N/A N/A N/A 5.002±0.00 N/A N/A 10.555±0.00 N/A 57.217±0.00 44.998±4.17 N/A
ENST00000429728 N/A N/A N/A 2.075±0.00 N/A N/A N/A 10.191±0.00 N/A N/A N/A N/A N/A N/A
ENST00000449935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.792±0.00
ENST00000454893 N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.974±0.00 N/A N/A N/A N/A
ENST00000488400 N/A N/A 4.689±0.00 6.875±0.00 N/A 14.544±0.00 3.777±0.00 N/A 8.039±0.00 2.587±0.00 5.425±0.00 34.002±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089T CIL_00089T_0001 VISTA 2:69833131-70434482

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 NAS spliceosomal complex assembly
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0005683 IDA U7 snRNP
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005829 IDA cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0030532 NAS small nuclear ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034719 IDA SMN-Sm protein complex
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078085 SNRPG small nuclear ribonucleoprotein polypeptide G protein_coding Danio_rerio
ENSMUSG00000057278 Snrpg small nuclear ribonucleoprotein polypeptide G protein_coding Mus_musculus

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