C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: secernin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144306 SCRN3 9606 + 2:174395730-174429575 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272732 SCRN3-001 174395745-174429575 protein_coding
  ENST00000409673 SCRN3-006 174395745-174428417 protein_coding
  ENST00000424069 SCRN3-009 174395792-174400103 protein_coding
  ENST00000427038 SCRN3-004 174395808-174401054 protein_coding
  ENST00000435964 SCRN3-002 174395752-174398314 protein_coding
  ENST00000437944 SCRN3-008 174395730-174427864 nonsense_mediated_decay
  ENST00000458563 SCRN3-003 174395741-174404210 protein_coding
  ENST00000475928 SCRN3-010 174410344-174428035 processed_transcript
  ENST00000488349 SCRN3-005 174395795-174397404 processed_transcript
  ENST00000490927 SCRN3-007 174395743-174424570 processed_transcript
  ENST00000548031 SCRN3-013 174398195-174404190 protein_coding
  ENST00000548868 SCRN3-011 174395730-174428317 nonsense_mediated_decay
  ENST00000548921 SCRN3-012 174410037-174428859 processed_transcript
  ENST00000549848 SCRN3-014 174410082-174427895 processed_transcript
  ENST00000610561 SCRN3-201 174395778-174428128 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000272732ENST00000409673ENST00000437944ENST00000475928ENST00000490927ENST00000548031ENST00000549848ENST00000610561
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000272732 N/A 0.335±0.00 1.211±0.21 1.589±0.74 N/A 0.453±0.00 1.228±0.00 N/A N/A N/A N/A 1.076±0.00 1.485±0.00
ENST00000409673 0.898±0.00 2.246±0.00 1.968±0.00 1.029±0.33 N/A 0.823±0.00 N/A 1.639±0.00 N/A N/A 3.200±0.00 1.169±0.00 1.580±0.00
ENST00000437944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.900±0.00 3.367±0.00
ENST00000475928 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.656±0.00 N/A N/A
ENST00000490927 1.552±0.00 N/A 4.393±2.21 2.679±0.80 0.888±0.00 1.993±0.00 3.951±0.00 2.057±0.00 1.043±0.00 N/A 3.299±0.00 2.736±0.00 2.891±0.32
ENST00000548031 N/A 2.300±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.394±0.00 6.324±0.00
ENST00000549848 N/A N/A N/A 1.205±0.00 1.692±0.00 N/A N/A 2.118±0.00 0.570±0.00 N/A 5.854±1.87 1.844±0.00 N/A
ENST00000610561 N/A N/A 3.536±0.00 N/A 0.774±0.00 N/A 1.661±0.00 1.904±0.00 1.834±0.00 2.414±0.00 1.636±0.09 2.576±0.00 1.840±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JW CIL_0008JW_0001 VISTA 2:173820816-174422736
CIL_0008K1 CIL_0008K1_0001 VISTA 2:173824009-174425635
CIL_0008S8 CIL_0008S8_0001 VISTA 2:173876675-174477772
CIL_00096H CIL_00096H_0001 VISTA 2:174031315-174632386
CIL_0008GI CIL_0008GI_0001 VISTA 2:174038535-174640167
CIL_0008K2 CIL_0008K2_0001 VISTA 2:174042582-174643514
CIL_0003IH CIL_0003IH_0002 CGP 2:174348022-174429575
CIL_00063Z CIL_00063Z_0002 CGP 2:174395730-174487094

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006508 IEA proteolysis
GO:0016805 IEA dipeptidase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016611 scrn3 secernin 3 protein_coding Danio_rerio
ENSMUSG00000008226 Scrn3 secernin 3 protein_coding Mus_musculus

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