C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: distal-less homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144355 DLX1 9606 + 2:172084740-172089677 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341900 DLX1-002 172085536-172089677 protein_coding
  ENST00000361609 DLX1-006 172084740-172086854 protein_coding
  ENST00000361725 DLX1-001 172085226-172089677 protein_coding
  ENST00000409492 DLX1-005 172085557-172087138 retained_intron
  ENST00000469444 DLX1-004 172084749-172088051 protein_coding
  ENST00000475989 DLX1-003 172086267-172089312 retained_intron
  ENST00000550686 DLX1-007 172087367-172088373 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000341900ENST00000361609ENST00000361725ENST00000409492ENST00000475989
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000341900 N/A N/A 0.562±0.35 0.052±0.00 N/A N/A N/A N/A 0.085±0.06 N/A N/A
ENST00000361609 N/A 0.025±0.00 N/A N/A N/A 0.035±0.00 N/A N/A 0.045±0.00 N/A 0.060±0.00
ENST00000361725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00
ENST00000409492 0.075±0.00 N/A 1.006±0.00 N/A 0.811±0.00 N/A 0.067±0.00 N/A 0.246±0.00 N/A N/A
ENST00000475989 0.045±0.00 0.010±0.00 1.231±0.78 N/A 0.230±0.16 0.037±0.00 N/A 0.054±0.00 N/A 0.030±0.00 0.034±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RB CIL_0007RB_0001 VISTA 2:171663732-172264836
CIL_0008A7 CIL_0008A7_0001 VISTA 2:171663843-172264792
CIL_0007RB CIL_0007RB_0002 VISTA 2:171664837-172267307
CIL_0008C9 CIL_0008C9_0001 VISTA 2:171771791-172373521
CIL_0009AY CIL_0009AY_0001 VISTA 2:171783051-172384518
CIL_0008AZ CIL_0008AZ_0001 VISTA 2:171791151-172392324
CIL_0008B0 CIL_0008B0_0001 VISTA 2:171792917-172394318
CIL_0004K6 CIL_0004K6_0001 CGP 2:171999583-172089677
CIL_0007JJ CIL_0007JJ_002B UCNEbase 2:172044408-172094161
CIL_00062L CIL_00062L_0002 CGP 2:172084740-172102900

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IEA nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0009954 IEA proximal/distal pattern formation
GO:0021544 IEA subpallium development
GO:0021766 IEA hippocampus development
GO:0021879 IEA forebrain neuron differentiation
GO:0021882 IEA regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0021892 IEA cerebral cortex GABAergic interneuron differentiation
GO:0021893 IEA cerebral cortex GABAergic interneuron fate commitment
GO:0030154 IEA cell differentiation
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0045746 IEA negative regulation of Notch signaling pathway
GO:0048706 IEA embryonic skeletal system development
GO:0048715 IEA negative regulation of oligodendrocyte differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013125 dlx1a distal-less homeobox gene 1a protein_coding Danio_rerio
ENSMUSG00000041911 Dlx1 distal-less homeobox 1 protein_coding Mus_musculus

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