C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144677 CTDSPL 9606 + 3:37861960-37984469 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273179 CTDSPL-001 37862174-37984469 protein_coding
  ENST00000310189 CTDSPL-005 37954417-37981125 processed_transcript
  ENST00000416688 CTDSPL-007 37964579-37968432 protein_coding
  ENST00000435525 CTDSPL-003 37862178-37947171 nonsense_mediated_decay
  ENST00000436654 CTDSPL-009 37975773-37982384 protein_coding
  ENST00000443503 CTDSPL-002 37861960-37984469 protein_coding
  ENST00000447745 CTDSPL-008 37964637-37984468 protein_coding
  ENST00000486978 CTDSPL-004 37944714-37975786 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273179ENST00000436654ENST00000443503
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273179 4.303±0.00 2.567±0.00 1.166±0.94 4.193±2.82 6.547±0.00 4.122±0.00 9.486±0.00 N/A 4.548±0.00 0.791±0.59 4.214±1.67 8.486±2.93 4.460±2.62
ENST00000436654 N/A N/A N/A N/A N/A N/A 2.197±0.00 N/A N/A N/A N/A N/A N/A
ENST00000443503 N/A 1.729±0.00 N/A N/A 0.948±0.00 3.784±3.04 8.370±0.00 2.497±0.00 4.004±0.00 N/A 2.403±1.08 5.864±1.63 3.185±1.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VQ CIL_0005VQ_0001 CGP 3:37452115-37984469
CIL_0008CZ CIL_0008CZ_0001 VISTA 3:37464508-38067589
CIL_00099X CIL_00099X_0001 VISTA 3:37469210-38073013
CIL_0005AN CIL_0005AN_0001 CGP 3:37861960-38007188

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001933 IEA negative regulation of protein phosphorylation
GO:0003674 ND molecular_function
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome
GO:2000134 IEA negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062116 ctdsplb CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like b protein_coding Danio_rerio
ENSDARG00000071673 ctdspla CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like a protein_coding Danio_rerio
ENSMUSG00000047409 Ctdspl CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like protein_coding Mus_musculus

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