C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: factor interacting with PAPOLA and CPSF1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145216 FIP1L1 9606 + 4:53377643-54295272 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306932 FIP1L1-003 53377696-53459621 protein_coding
  ENST00000337488 FIP1L1-001 53377645-53459668 protein_coding
  ENST00000358575 FIP1L1-002 53377645-53459668 protein_coding
  ENST00000504094 FIP1L1-010 53428066-53460861 protein_coding
  ENST00000505125 FIP1L1-004 53377803-53459621 retained_intron
  ENST00000507166 FIP1L1-005 53377839-54295272 protein_coding
  ENST00000507206 FIP1L1-013 53458551-53459402 retained_intron
  ENST00000507922 FIP1L1-009 53377671-53428221 protein_coding
  ENST00000510668 FIP1L1-015 53378218-53389849 processed_transcript
  ENST00000511055 FIP1L1-014 53442253-53453131 retained_intron
  ENST00000511376 FIP1L1-012 53377643-53390597 processed_transcript
  ENST00000513008 FIP1L1-008 53425836-53459621 retained_intron
  ENST00000513975 FIP1L1-006 53377843-53440983 retained_intron
  ENST00000514543 FIP1L1-011 53382278-53459618 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyMusclePlacentaTestisENST00000306932ENST00000337488ENST00000358575ENST00000507922
Transcript ID Brain Kidney Muscle Placenta Testis
ENST00000306932 N/A N/A N/A 15.805±0.00 12.019±0.00
ENST00000337488 N/A N/A N/A N/A 20.547±0.00
ENST00000358575 5.688±0.00 4.019±0.00 N/A N/A N/A
ENST00000507922 N/A N/A 9.973±0.00 N/A 29.238±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RT CIL_0008RT_0001 VISTA 4:52776116-53378130
CIL_0001CS CIL_0001CS_0001 CGP 4:52872982-54295272
CIL_0007V9 CIL_0007V9_0001 VISTA 4:52895307-53499113
CIL_0001CL CIL_0001CL_0001 CGP 4:53377643-54295272

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0004713 IEA protein tyrosine kinase activity
GO:0004714 IEA transmembrane receptor protein tyrosine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005847 IEA mRNA cleavage and polyadenylation specificity factor complex
GO:0006397 IEA mRNA processing
GO:0006468 IEA protein phosphorylation
GO:0007169 IEA transmembrane receptor protein tyrosine kinase signaling pathway
GO:0016021 IEA integral component of membrane
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043328 fip1l1a FIP1 like 1a (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000070431 fip1l1b FIP1 like 1b (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000029227 Fip1l1 FIP1 like 1 (S. cerevisiae) protein_coding Mus_musculus

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