C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: centromere protein C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145241 CENPC 9606 - 4:67471803-67545606 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273853 CENPC-001 67471803-67545606 protein_coding
  ENST00000506410 CENPC-007 67512050-67514245 retained_intron
  ENST00000506882 CENPC-003 67472482-67545483 nonsense_mediated_decay
  ENST00000507196 CENPC-008 67505030-67508919 retained_intron
  ENST00000510189 CENPC-004 67493405-67545503 retained_intron
  ENST00000513216 CENPC-006 67472477-67530866 nonsense_mediated_decay
  ENST00000515140 CENPC-005 67474692-67495201 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273853ENST00000506882ENST00000507196ENST00000510189ENST00000513216ENST00000515140
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273853 0.757±0.00 1.027±0.00 N/A 0.432±0.00 1.237±0.00 1.299±0.97 0.585±0.00 0.645±0.08 1.648±1.46 1.209±0.98 N/A 1.868±0.92 0.226±0.03 1.315±0.33
ENST00000506882 0.519±0.00 1.493±0.00 0.681±0.00 0.656±0.00 1.093±0.00 1.068±0.00 N/A N/A 0.105±0.00 2.188±0.00 N/A 1.110±0.00 0.263±0.08 1.086±0.00
ENST00000507196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.820±0.00 N/A N/A N/A
ENST00000510189 N/A N/A N/A N/A 1.453±0.00 1.565±0.00 0.836±0.00 1.177±0.00 1.592±0.00 2.405±0.00 N/A 1.568±0.44 0.288±0.00 2.504±0.00
ENST00000513216 0.755±0.00 1.943±0.00 N/A N/A 0.633±0.00 1.507±0.00 0.745±0.06 0.986±0.00 0.327±0.00 0.757±0.00 N/A 1.692±0.00 0.428±0.20 1.926±0.08
ENST00000515140 N/A N/A N/A N/A N/A N/A N/A N/A 0.537±0.00 N/A 0.558±0.00 1.532±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000M8 CIL_0000M8_0001 CGP 4:65319563-67545606
CIL_0000M7 CIL_0000M7_0001 CGP 4:67471803-67607337

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 IMP mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0000780 IDA condensed nuclear chromosome, centromeric region
GO:0003677 TAS DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005721 IDA pericentric heterochromatin
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007059 IMP chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0019237 IEA centromeric DNA binding
GO:0051382 IMP kinetochore assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000029253 Cenpc1 centromere protein C1 protein_coding Mus_musculus

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