C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single-stranded DNA binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145687 SSBP2 9606 - 5:81413021-81751797 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320672 SSBP2-001 81413021-81751253 protein_coding
  ENST00000504136 SSBP2-015 81420435-81443273 retained_intron
  ENST00000504174 SSBP2-010 81467017-81750901 processed_transcript
  ENST00000504985 SSBP2-008 81419936-81513717 protein_coding
  ENST00000505980 SSBP2-007 81420014-81751047 protein_coding
  ENST00000506960 SSBP2-014 81615056-81751028 retained_intron
  ENST00000507472 SSBP2-017 81466973-81751120 processed_transcript
  ENST00000507655 SSBP2-012 81446869-81751797 processed_transcript
  ENST00000507968 SSBP2-018 81615486-81616585 processed_transcript
  ENST00000508912 SSBP2-016 81636472-81751016 retained_intron
  ENST00000509013 SSBP2-013 81466974-81751022 protein_coding
  ENST00000509053 SSBP2-006 81419873-81751048 protein_coding
  ENST00000509743 SSBP2-019 81442651-81616473 processed_transcript
  ENST00000510060 SSBP2-021 81419979-81448063 processed_transcript
  ENST00000512098 SSBP2-011 81473700-81750757 processed_transcript
  ENST00000512923 SSBP2-009 81419963-81513717 protein_coding
  ENST00000513785 SSBP2-020 81420288-81437830 retained_intron
  ENST00000514493 SSBP2-003 81419918-81751250 protein_coding
  ENST00000515395 SSBP2-004 81420181-81751097 protein_coding
  ENST00000615665 SSBP2-201 81417360-81751253 protein_coding
  ENST00000622130 SSBP2-202 81419935-81751086 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320672ENST00000504985ENST00000505980ENST00000507968ENST00000508912ENST00000510060ENST00000514493ENST00000515395ENST00000615665ENST00000622130
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320672 0.480±0.00 N/A 0.768±0.00 1.512±0.65 0.923±0.15 1.288±0.58 0.649±0.00 0.358±0.30 N/A 0.879±0.34 N/A 1.574±1.27 0.248±0.01 0.389±0.12
ENST00000504985 N/A N/A N/A N/A N/A N/A N/A 0.487±0.00 N/A N/A N/A N/A 1.192±0.35 N/A
ENST00000505980 N/A N/A N/A N/A N/A N/A 2.471±0.00 N/A N/A 3.620±0.00 3.046±0.00 2.389±1.41 1.908±0.39 4.643±0.00
ENST00000507968 N/A N/A 10.778±0.00 N/A 10.965±0.00 14.943±0.00 13.711±0.00 7.714±0.00 29.652±0.00 19.610±0.00 5.057±0.00 18.659±0.00 N/A N/A
ENST00000508912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.612±0.00 N/A N/A N/A
ENST00000510060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.464±0.00 1.230±0.00 N/A
ENST00000514493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.166±0.00 N/A
ENST00000515395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.689±0.00 N/A N/A N/A
ENST00000615665 N/A N/A N/A 1.938±0.00 1.685±0.00 1.328±0.00 0.387±0.00 N/A 2.895±0.00 3.444±0.00 0.246±0.00 0.873±0.00 N/A N/A
ENST00000622130 6.069±0.00 2.728±0.00 N/A 4.912±0.72 3.941±2.55 8.761±0.00 6.386±0.00 6.237±0.00 0.900±0.00 5.233±0.00 2.145±0.00 11.253±2.35 4.898±0.20 9.989±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TJ CIL_0005TJ_0002 CGP 5:81330005-81751797
CIL_0005TK CIL_0005TK_0002 CGP 5:81413021-82276857

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003697 NAS single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 NAS regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015991 SSBP2 (1 of 2) single-stranded DNA binding protein 2 protein_coding Danio_rerio
ENSDARG00000057395 SSBP2 (2 of 2) single-stranded DNA binding protein 2 protein_coding Danio_rerio
ENSMUSG00000003992 Ssbp2 single-stranded DNA binding protein 2 protein_coding Mus_musculus

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