C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000145833 DDX46 9606 + 5:134758779-134855133 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354283 DDX46-002 134758804-134829296 protein_coding
  ENST00000452510 DDX46-001 134758781-134831138 protein_coding
  ENST00000503946 DDX46-003 134790153-134829932 retained_intron
  ENST00000505592 DDX46-010 134781141-134784693 retained_intron
  ENST00000506332 DDX46-004 134825813-134829039 retained_intron
  ENST00000507053 DDX46-006 134818916-134855133 nonsense_mediated_decay
  ENST00000507392 DDX46-005 134758779-134829039 nonsense_mediated_decay
  ENST00000509178 DDX46-011 134782070-134794968 processed_transcript
  ENST00000509255 DDX46-007 134773785-134777894 retained_intron
  ENST00000513592 DDX46-009 134782051-134794924 nonsense_mediated_decay
  ENST00000513987 DDX46-008 134780736-134781952 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354283ENST00000452510ENST00000507392
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354283 6.002±0.00 2.177±0.00 3.740±2.20 3.486±0.20 4.915±1.46 4.494±0.00 5.088±1.53 2.327±0.37 3.362±1.30 4.123±2.67 8.748±5.12 7.956±5.02 17.592±8.94
ENST00000452510 2.643±0.00 N/A 0.666±0.00 N/A N/A 1.276±0.00 N/A N/A N/A 1.439±0.00 1.840±0.00 N/A N/A
ENST00000507392 N/A N/A 4.012±0.00 4.555±0.00 5.029±0.00 2.482±0.00 N/A N/A 1.537±0.00 3.481±0.00 1.931±0.00 N/A 7.501±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JT CIL_0007JT_0002 UCNEbase 5:134524545-135264654
CIL_0009AP CIL_0009AP_0001 VISTA 5:134719818-135321709
CIL_0005XR CIL_0005XR_0001 CGP 5:134738501-134855133
CIL_0005XQ CIL_0005XQ_0001 CGP 5:134758779-134859737

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006200 IEA ATP catabolic process
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 IEA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000094863 ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 protein_coding Danio_rerio
ENSMUSG00000021500 Ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 protein_coding Mus_musculus

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