C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat transmembrane neuronal 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146006 LRRTM2 9606 - 5:138868923-138875368 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000274711 LRRTM2-001 138868923-138875290 protein_coding
  ENST00000518785 LRRTM2-002 138872632-138875368 protein_coding
  ENST00000521094 LRRTM2-003 138872455-138875304 protein_coding
  ENST00000523537 LRRTM2-004 138874046-138875341 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000274711ENST00000518785
Transcript ID Brain
ENST00000274711 7.635±0.01
ENST00000518785 13.323±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DA CIL_0005DA_0001 CGP 5:138554882-138935034
CIL_00062R CIL_00062R_0002 CGP 5:138610967-138935034
CIL_0005D1 CIL_0005D1_0001 CGP 5:138868923-139293557

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002091 IEA negative regulation of receptor internalization
GO:0005515 IEA protein binding
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0042043 IEA neurexin family protein binding
GO:0045211 IEA postsynaptic membrane
GO:0050808 IEA synapse organization
GO:0060076 IEA excitatory synapse
GO:0060291 IEA long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071374 lrrtm2 leucine rich repeat transmembrane neuronal 2 protein_coding Danio_rerio
ENSDARG00000090425 lrrtm2 leucine rich repeat transmembrane neuronal 2 protein_coding Danio_rerio
ENSMUSG00000071862 Lrrtm2 leucine rich repeat transmembrane neuronal 2 protein_coding Mus_musculus

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