C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: MMS22-like, DNA repair protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146263 MMS22L 9606 - 6:97142161-97283217 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000275053 MMS22L-001 97142161-97283176 protein_coding
  ENST00000369251 MMS22L-010 97146545-97282553 protein_coding
  ENST00000482634 MMS22L-003 97245979-97263352 protein_coding
  ENST00000484170 MMS22L-004 97259663-97272795 processed_transcript
  ENST00000496119 MMS22L-002 97267904-97283210 nonsense_mediated_decay
  ENST00000506256 MMS22L-011 97259372-97272801 processed_transcript
  ENST00000508820 MMS22L-005 97265720-97283217 retained_intron
  ENST00000508976 MMS22L-007 97253465-97282511 retained_intron
  ENST00000509383 MMS22L-006 97230269-97283188 nonsense_mediated_decay
  ENST00000510018 MMS22L-008 97233861-97281304 protein_coding
  ENST00000511335 MMS22L-009 97258663-97273105 retained_intron
  ENST00000514790 MMS22L-012 97151578-97162045 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000275053ENST00000369251ENST00000496119ENST00000506256ENST00000508820ENST00000509383ENST00000511335
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000275053 0.103±0.00 0.439±0.00 N/A 0.307±0.00 N/A 0.234±0.00 0.062±0.00 N/A 0.276±0.25 0.105±0.00 N/A 0.295±0.14 0.371±0.26 0.807±0.41
ENST00000369251 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 0.025±0.00 1.308±0.00 N/A 2.053±0.54
ENST00000496119 N/A N/A N/A N/A N/A N/A N/A 0.724±0.00 N/A N/A N/A N/A N/A N/A
ENST00000506256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A
ENST00000508820 N/A N/A N/A N/A 0.322±0.00 0.391±0.00 N/A 0.101±0.00 N/A N/A N/A 0.498±0.00 N/A N/A
ENST00000509383 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.571±0.00 N/A N/A N/A N/A
ENST00000511335 0.094±0.00 0.223±0.00 0.117±0.00 0.079±0.02 0.116±0.00 N/A 0.055±0.00 0.084±0.00 0.023±0.00 0.209±0.00 0.010±0.01 0.147±0.09 0.069±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096U CIL_00096U_0001 VISTA 6:96796735-97397883
CIL_0001Y2 CIL_0001Y2_0002 CGP 6:96924620-97283217
CIL_0007TH CIL_0007TH_0001 VISTA 6:97006167-97607637
CIL_0007MX CIL_0007MX_0001 UCNEbase 6:97068636-99185945
CIL_0001Y3 CIL_0001Y3_0002 CGP 6:97142161-98839490

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0031297 IMP replication fork processing
GO:0035101 IDA FACT complex
GO:0042555 IDA MCM complex
GO:0043596 IDA nuclear replication fork

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074691 mms22l MMS22-like, DNA repair protein protein_coding Danio_rerio
ENSMUSG00000045751 Mms22l MMS22-like, DNA repair protein protein_coding Mus_musculus

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