C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sex comb on midleg-like 4 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146285 SCML4 9606 - 6:107704104-107824317 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369020 SCML4-005 107705200-107824312 protein_coding
  ENST00000369021 SCML4-201 107718954-107772251 protein_coding
  ENST00000369022 SCML4-008 107704104-107824317 protein_coding
  ENST00000369025 SCML4-002 107704651-107732395 protein_coding
  ENST00000426221 SCML4-006 107740065-107824286 nonsense_mediated_decay
  ENST00000440927 SCML4-007 107744949-107772251 protein_coding
  ENST00000459992 SCML4-009 107719730-107772251 retained_intron
  ENST00000463507 SCML4-004 107720671-107824294 retained_intron
  ENST00000473515 SCML4-001 107718955-107824312 retained_intron
  ENST00000476798 SCML4-010 107718445-107732103 retained_intron
  ENST00000479803 SCML4-003 107720709-107744054 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000369020ENST00000369022ENST00000369025ENST00000440927ENST00000459992ENST00000463507ENST00000473515ENST00000476798ENST00000479803
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000369020 N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A 0.712±0.00
ENST00000369022 0.020±0.00 1.932±0.00 N/A 0.075±0.00 0.356±0.00 0.219±0.04 0.034±0.02 0.085±0.00 0.042±0.00 0.701±0.04 0.184±0.03 0.054±0.01 N/A
ENST00000369025 N/A N/A 0.432±0.00 N/A 0.102±0.00 N/A N/A N/A N/A 0.333±0.00 0.269±0.28 0.148±0.05 0.132±0.00
ENST00000440927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A
ENST00000459992 N/A N/A N/A N/A 0.072±0.00 N/A 0.033±0.00 0.100±0.05 N/A 0.173±0.00 0.125±0.00 0.051±0.00 N/A
ENST00000463507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.567±0.00
ENST00000473515 0.003±0.00 N/A N/A 0.014±0.00 0.134±0.00 0.184±0.14 N/A 0.012±0.00 0.080±0.04 0.135±0.00 N/A N/A 0.078±0.00
ENST00000476798 N/A 0.552±0.00 0.122±0.00 N/A N/A N/A N/A N/A 0.086±0.00 0.124±0.00 0.077±0.04 N/A N/A
ENST00000479803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KA CIL_0007KA_0001 UCNEbase 6:107632412-108443377

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017266 scml4 sex comb on midleg-like 4 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000044770 Scml4 sex comb on midleg-like 4 (Drosophila) protein_coding Mus_musculus

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