C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A)-specific ribonuclease (PARN)-like domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146453 PNLDC1 9606 + 6:159800249-159820704 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000275275 PNLDC1-001 159800269-159820704 nonsense_mediated_decay
  ENST00000392167 PNLDC1-002 159800274-159820703 protein_coding
  ENST00000609334 PNLDC1-005 159800294-159805738 processed_transcript
  ENST00000609658 PNLDC1-006 159808928-159816595 retained_intron
  ENST00000610041 PNLDC1-003 159800266-159809121 nonsense_mediated_decay
  ENST00000610048 PNLDC1-004 159800271-159806037 nonsense_mediated_decay
  ENST00000610273 PNLDC1-201 159800249-159820703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000275275ENST00000392167ENST00000609334ENST00000609658ENST00000610041ENST00000610048ENST00000610273
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000275275 N/A 0.224±0.00 N/A N/A N/A N/A 0.023±0.00 N/A 0.103±0.00 N/A 1.403±0.00
ENST00000392167 0.009±0.00 0.599±0.00 N/A N/A 0.058±0.03 0.018±0.00 N/A 0.025±0.00 0.135±0.01 0.098±0.02 7.262±3.74
ENST00000609334 N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.00 N/A N/A
ENST00000609658 N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000610041 N/A 0.834±0.00 N/A N/A N/A N/A 0.032±0.00 N/A N/A 0.087±0.00 N/A
ENST00000610048 N/A N/A 0.437±0.00 N/A N/A N/A N/A 0.251±0.00 0.139±0.00 0.424±0.00 7.861±0.00
ENST00000610273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.504±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089P CIL_00089P_0001 VISTA 6:159654795-160257694

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000073460 Pnldc1 poly(A)-specific ribonuclease (PARN)-like domain containing 1 protein_coding Mus_musculus

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