C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glioblastoma amplified sequence
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146729 GBAS 9606 + 7:55951793-56000181 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322090 GBAS-001 55964581-56000181 protein_coding
  ENST00000415967 GBAS-011 55981473-55999304 nonsense_mediated_decay
  ENST00000437587 GBAS-004 55964962-55994938 protein_coding
  ENST00000446692 GBAS-005 55951793-55984877 protein_coding
  ENST00000446778 GBAS-002 55964581-56000181 protein_coding
  ENST00000456204 GBAS-007 55964606-55983812 nonsense_mediated_decay
  ENST00000464772 GBAS-010 55981771-55983790 retained_intron
  ENST00000470036 GBAS-009 55964595-55978599 retained_intron
  ENST00000472404 GBAS-008 55965113-55981498 processed_transcript
  ENST00000487370 GBAS-006 55964998-55981503 processed_transcript
  ENST00000497279 GBAS-003 55978907-56000178 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322090ENST00000415967ENST00000437587ENST00000446692ENST00000446778ENST00000472404ENST00000497279
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322090 15.866±0.00 7.103±0.00 2.660±0.00 23.825±13.27 16.954±10.03 16.097±6.62 62.967±47.01 18.092±17.35 7.634±3.79 13.039±6.05 55.939±24.61 15.697±3.10 10.180±1.19 15.434±8.16
ENST00000415967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.322±0.00 6.817±0.00 N/A
ENST00000437587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.107±0.00 N/A N/A N/A
ENST00000446692 N/A N/A 4.530±0.00 N/A N/A N/A N/A 2.802±0.00 N/A 9.937±0.00 N/A N/A N/A N/A
ENST00000446778 N/A N/A N/A N/A 7.583±0.00 7.447±0.00 N/A N/A N/A N/A N/A N/A N/A 8.709±0.00
ENST00000472404 N/A N/A 79.455±0.00 92.289±0.00 71.968±0.00 76.178±0.00 201.354±0.00 N/A 153.781±0.00 88.950±0.00 584.162±0.00 160.293±0.00 N/A N/A
ENST00000497279 N/A N/A N/A N/A N/A N/A N/A 0.578±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000646 CIL_000646_0001 CGP 7:55793544-55955239

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005739 ISS mitochondrion
GO:0005887 TAS integral component of plasma membrane
GO:0006119 IMP oxidative phosphorylation
GO:0006754 IMP ATP biosynthetic process
GO:0016020 TAS membrane
GO:2000984 IMP negative regulation of ATP citrate synthase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007264 gbas glioblastoma amplified sequence protein_coding Danio_rerio
ENSMUSG00000029432 Gbas glioblastoma amplified sequence protein_coding Mus_musculus

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