C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphoserine phosphatase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146733 PSPH 9606 - 7:56011051-56051604 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000275605 PSPH-001 56011067-56051604 protein_coding
  ENST00000395471 PSPH-002 56011068-56051604 protein_coding
  ENST00000413218 PSPH-004 56021206-56051392 protein_coding
  ENST00000416592 PSPH-006 56021206-56051467 protein_coding
  ENST00000419984 PSPH-007 56021073-56051288 protein_coding
  ENST00000421312 PSPH-003 56021073-56051467 protein_coding
  ENST00000421626 PSPH-009 56015031-56034156 protein_coding
  ENST00000424596 PSPH-010 56021181-56051446 protein_coding
  ENST00000427797 PSPH-011 56017277-56034172 nonsense_mediated_decay
  ENST00000437355 PSPH-012 56011051-56051448 nonsense_mediated_decay
  ENST00000459834 PSPH-008 56011538-56034171 processed_transcript
  ENST00000472276 PSPH-005 56033134-56034171 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000275605ENST00000395471ENST00000416592ENST00000419984ENST00000421626ENST00000424596ENST00000437355ENST00000459834ENST00000472276
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000275605 N/A 0.785±0.00 1.162±0.00 2.339±0.00 0.673±0.01 1.141±0.00 N/A 0.589±0.00 0.685±0.00 0.335±0.00 0.683±0.00 3.154±0.00 0.653±0.00 2.978±0.00
ENST00000395471 0.745±0.00 N/A N/A 0.348±0.00 1.720±0.00 N/A 0.525±0.07 1.274±0.00 N/A 0.626±0.00 N/A 2.783±0.16 1.709±0.47 2.826±0.00
ENST00000416592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.784±0.00 6.086±0.00
ENST00000419984 N/A N/A N/A N/A N/A N/A 0.637±0.00 N/A N/A N/A N/A N/A 1.702±0.00 N/A
ENST00000421626 0.619±0.00 N/A N/A N/A N/A N/A N/A 1.338±0.00 N/A N/A N/A N/A N/A N/A
ENST00000424596 1.398±0.00 N/A N/A N/A N/A 1.327±0.00 3.556±0.00 N/A N/A 2.493±0.00 N/A N/A N/A N/A
ENST00000437355 N/A N/A N/A 1.251±0.00 N/A N/A N/A 1.302±0.37 N/A 0.748±0.00 2.894±0.81 12.571±3.33 0.872±0.00 4.198±3.13
ENST00000459834 N/A N/A N/A 1.871±1.01 2.339±0.00 N/A N/A N/A N/A N/A 1.418±0.00 5.330±0.00 N/A 7.337±0.00
ENST00000472276 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.850±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000645 CIL_000645_0001 CGP 7:56011051-56063989

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 IDA:IEA magnesium ion binding
GO:0004647 IEA:IDA phosphoserine phosphatase activity
GO:0005509 IDA calcium ion binding
GO:0005737 IBA:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006563 IDA L-serine metabolic process
GO:0006564 IEA:IBA L-serine biosynthetic process
GO:0008152 IEA metabolic process
GO:0008253 IEA 5'-nucleotidase activity
GO:0008652 TAS cellular amino acid biosynthetic process
GO:0009612 IEA response to mechanical stimulus
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0031667 IEA response to nutrient levels
GO:0033574 IEA response to testosterone
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042803 IPI protein homodimerization activity
GO:0043005 IEA neuron projection
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040314 psph phosphoserine phosphatase protein_coding Danio_rerio
ENSMUSG00000029446 Psph phosphoserine phosphatase protein_coding Mus_musculus

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