C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chondroitin sulfate N-acetylgalactosaminyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147408 CSGALNACT1 9606 - 8:19404161-19758029 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000332246 CSGALNACT1-001 19404161-19682583 protein_coding
  ENST00000397998 CSGALNACT1-002 19404161-19682761 nonsense_mediated_decay
  ENST00000454498 CSGALNACT1-004 19404161-19602495 protein_coding
  ENST00000517494 CSGALNACT1-006 19505545-19758029 protein_coding
  ENST00000517651 CSGALNACT1-011 19505880-19642022 processed_transcript
  ENST00000518542 CSGALNACT1-016 19420383-19495191 processed_transcript
  ENST00000519222 CSGALNACT1-003 19439877-19602759 nonsense_mediated_decay
  ENST00000520003 CSGALNACT1-012 19505674-19602495 protein_coding
  ENST00000522573 CSGALNACT1-008 19506116-19757217 processed_transcript
  ENST00000522732 CSGALNACT1-015 19506037-19532020 processed_transcript
  ENST00000522854 CSGALNACT1-005 19405780-19601865 protein_coding
  ENST00000523227 CSGALNACT1-010 19505906-19683240 processed_transcript
  ENST00000523262 CSGALNACT1-007 19505523-19757938 protein_coding
  ENST00000523919 CSGALNACT1-014 19585286-19602224 processed_transcript
  ENST00000524112 CSGALNACT1-013 19587874-19602224 processed_transcript
  ENST00000524213 CSGALNACT1-009 19505792-19757305 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000332246ENST00000454498ENST00000519222ENST00000522573ENST00000522854
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000332246 N/A N/A 1.856±0.00 0.709±0.00 N/A N/A N/A N/A 2.773±0.00 N/A N/A
ENST00000454498 N/A 2.448±0.00 0.604±0.00 N/A N/A N/A N/A N/A 1.504±0.00 N/A N/A
ENST00000519222 0.411±0.00 N/A N/A N/A N/A N/A 0.649±0.00 0.280±0.00 N/A N/A N/A
ENST00000522573 N/A N/A N/A N/A N/A N/A N/A 1.528±0.00 N/A N/A N/A
ENST00000522854 N/A 1.666±0.00 1.374±0.00 N/A 1.475±0.00 2.742±2.18 8.408±0.00 N/A 2.574±1.24 4.567±0.00 1.689±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IX CIL_0003IX_0001 CGP 8:19313617-19758029
CIL_0003TM CIL_0003TM_0001 CGP 8:19404161-19852083

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001958 IEA endochondral ossification
GO:0005622 IC intracellular
GO:0005975 TAS carbohydrate metabolic process
GO:0007399 NAS nervous system development
GO:0008037 NAS cell recognition
GO:0008283 NAS cell proliferation
GO:0008376 IDA:IEA acetylgalactosaminyltransferase activity
GO:0008955 IDA peptidoglycan glycosyltransferase activity
GO:0009653 NAS anatomical structure morphogenesis
GO:0015014 NAS heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0015020 IDA glucuronosyltransferase activity
GO:0019276 IDA UDP-N-acetylgalactosamine metabolic process
GO:0030166 ISS proteoglycan biosynthetic process
GO:0030173 NAS integral component of Golgi membrane
GO:0030198 NAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 IDA chondroitin sulfate biosynthetic process
GO:0030210 NAS heparin biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0046398 IDA UDP-glucuronate metabolic process
GO:0046872 NAS metal ion binding
GO:0047237 IDA glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0047238 IDA glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050650 ISS chondroitin sulfate proteoglycan biosynthetic process
GO:0050651 ISS dermatan sulfate proteoglycan biosynthetic process
GO:0050653 IDA chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process
GO:0051216 IEA cartilage development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040535 CSGALNACT1 (1 of 2) chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein_coding Danio_rerio
ENSDARG00000089233 CSGALNACT1 (2 of 2) chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein_coding Danio_rerio
ENSMUSG00000036356 Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein_coding Mus_musculus

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