C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin family member 30
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148158 SNX30 9606 + 9:112750838-112881671 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000374232 SNX30-001 112750838-112874987 protein_coding
  ENST00000416585 SNX30-002 112838585-112866525 protein_coding
  ENST00000604751 SNX30-003 112856708-112881671 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374232
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374232 2.369±0.00 0.614±0.00 2.510±0.00 8.220±3.19 1.804±0.96 2.538±1.01 0.650±0.29 2.640±1.50 1.688±0.23 5.370±1.46 0.652±0.00 1.964±0.68 0.768±0.61 7.383±1.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X4 CIL_0005X4_0001 CGP 9:112683926-112881671
CIL_0000Y7 CIL_0000Y7_0001 CGP 9:112750838-112890913

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0006915 IBA apoptotic process
GO:0035091 IBA:IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069601 snx30 sorting nexin family member 30 protein_coding Danio_rerio
ENSMUSG00000028385 Snx30 sorting nexin family member 30 protein_coding Mus_musculus

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