C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: APOBEC1 complementation factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148584 A1CF 9606 - 10:50799409-50885675 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000282641 A1CF-201 50799421-50885675 protein_coding
  ENST00000373993 A1CF-002 50806562-50859985 protein_coding
  ENST00000373995 A1CF-006 50806562-50885675 protein_coding
  ENST00000373997 A1CF-004 50806562-50885675 protein_coding
  ENST00000374001 A1CF-001 50799409-50885675 protein_coding
  ENST00000395489 A1CF-202 50799421-50885675 protein_coding
  ENST00000395495 A1CF-203 50799421-50885675 protein_coding
  ENST00000414883 A1CF-003 50836074-50885675 protein_coding
  ENST00000473480 A1CF-005 50828131-50885675 processed_transcript
  ENST00000493415 A1CF-007 50811044-50828461 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000373993ENST00000373997ENST00000374001ENST00000395495ENST00000493415
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000373993 N/A N/A N/A N/A N/A 0.188±0.00 N/A 0.417±0.00 N/A N/A
ENST00000373997 N/A N/A 0.564±0.00 2.139±0.00 N/A N/A N/A N/A N/A N/A
ENST00000374001 0.025±0.00 1.567±0.00 0.016±0.00 0.816±0.00 12.679±12.01 2.301±0.00 0.006±0.00 0.032±0.00 N/A 0.042±0.00
ENST00000395495 N/A N/A N/A N/A 0.269±0.00 2.020±0.00 N/A N/A N/A N/A
ENST00000493415 N/A N/A N/A N/A N/A N/A N/A N/A 0.111±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EK CIL_0006EK_0002 CGP 10:50799409-52298350

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0006397 IEA mRNA processing
GO:0010467 TAS gene expression
GO:0010609 IEA mRNA localization resulting in posttranscriptional regulation of gene expression
GO:0016554 TAS cytidine to uridine editing
GO:0016556 TAS mRNA modification
GO:0030895 IDA apolipoprotein B mRNA editing enzyme complex
GO:0050821 IDA protein stabilization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002968 a1cf apobec1 complementation factor protein_coding Danio_rerio
ENSMUSG00000052595 A1cf APOBEC1 complementation factor protein_coding Mus_musculus

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