C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA phosphotransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000149743 TRPT1 9606 - 11:64223799-64226254 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317459 TRPT1-002 64223845-64226209 protein_coding
  ENST00000394546 TRPT1-201 64223800-64226254 protein_coding
  ENST00000394547 TRPT1-001 64223799-64226150 protein_coding
  ENST00000536158 TRPT1-006 64223830-64224824 retained_intron
  ENST00000536234 TRPT1-005 64223877-64226233 retained_intron
  ENST00000537907 TRPT1-012 64223833-64226164 retained_intron
  ENST00000539436 TRPT1-004 64223830-64226229 retained_intron
  ENST00000539595 TRPT1-003 64223856-64226158 retained_intron
  ENST00000540472 TRPT1-010 64224801-64226234 processed_transcript
  ENST00000541278 TRPT1-202 64223800-64226254 protein_coding
  ENST00000541928 TRPT1-007 64223842-64224669 retained_intron
  ENST00000542040 TRPT1-011 64224759-64226141 retained_intron
  ENST00000544286 TRPT1-009 64223833-64224634 protein_coding
  ENST00000545812 TRPT1-015 64224203-64226148 protein_coding
  ENST00000546089 TRPT1-014 64223853-64225870 protein_coding
  ENST00000546133 TRPT1-008 64223830-64224666 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverMuscleOvaryTestisENST00000317459ENST00000394547ENST00000536158ENST00000539595ENST00000541278ENST00000541928
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000317459 N/A 11.927±7.06 N/A N/A 13.008±9.77 28.854±22.75 19.363±0.00 53.336±0.00 30.003±10.59 20.894±0.00
ENST00000394547 N/A N/A N/A N/A 4.649±0.00 N/A N/A 19.907±0.00 N/A N/A
ENST00000536158 12.274±0.00 11.107±0.00 5.684±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000539595 N/A N/A N/A 2.049±0.00 N/A N/A N/A N/A N/A N/A
ENST00000541278 N/A N/A N/A N/A N/A N/A 1.317±0.00 N/A N/A N/A
ENST00000541928 N/A N/A N/A N/A N/A N/A N/A 31.758±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000215 IEA tRNA 2'-phosphotransferase activity
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0008665 IEA 2'-phosphotransferase activity
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0045859 IEA regulation of protein kinase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037628 trpt1 tRNA phosphotransferase 1 protein_coding Danio_rerio
ENSMUSG00000047656 Trpt1 tRNA phosphotransferase 1 protein_coding Mus_musculus

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