C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: C-type lectin domain family 1, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000150048 CLEC1A 9606 - 12:10069554-10111627 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315330 CLEC1A-001 10069554-10098985 protein_coding
  ENST00000414501 CLEC1A-002 10089127-10111627 protein_coding
  ENST00000420265 CLEC1A-004 10070763-10098950 protein_coding
  ENST00000457018 CLEC1A-003 10070483-10099014 protein_coding
  ENST00000544104 CLEC1A-006 10081269-10099028 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315330ENST00000420265ENST00000457018ENST00000544104
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315330 N/A N/A 0.167±0.00 0.132±0.00 N/A 0.046±0.00 N/A 0.170±0.00 0.631±0.00 N/A N/A 0.538±0.00 4.360±0.38 0.203±0.00
ENST00000420265 N/A N/A N/A 0.240±0.00 N/A N/A 0.559±0.30 0.935±0.67 0.179±0.00 N/A N/A 0.922±0.00 30.031±0.00 1.685±0.95
ENST00000457018 2.645±0.00 3.772±0.00 N/A 0.330±0.00 2.195±1.02 4.431±0.00 0.794±0.00 0.940±0.00 1.172±0.00 25.005±0.00 1.181±0.00 1.242±0.98 21.626±4.96 1.416±0.46
ENST00000544104 N/A N/A N/A 0.645±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000TD CIL_0000TD_0001 CGP 12:10030677-10111627
CIL_0000TC CIL_0000TC_0001 CGP 12:10069554-10130258

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004888 TAS transmembrane signaling receptor activity
GO:0005622 TAS intracellular
GO:0005887 TAS integral component of plasma membrane
GO:0006952 TAS defense response
GO:0007166 TAS cell surface receptor signaling pathway
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000033082 Clec1a C-type lectin domain family 1, member a protein_coding Mus_musculus

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