C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neuronal PAS domain protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151322 NPAS3 9606 + 14:32934933-33804176 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000346562 NPAS3-001 32939243-33804176 protein_coding
  ENST00000356141 NPAS3-004 32939317-33801109 protein_coding
  ENST00000357798 NPAS3-010 32939317-33801109 protein_coding
  ENST00000546849 NPAS3-013 33215312-33612580 protein_coding
  ENST00000547068 NPAS3-008 33213678-33681042 protein_coding
  ENST00000548645 NPAS3-006 32939272-33801278 protein_coding
  ENST00000549770 NPAS3-011 33215182-33560414 retained_intron
  ENST00000550662 NPAS3-014 33608487-33612589 processed_transcript
  ENST00000551008 NPAS3-009 33215213-33681042 protein_coding
  ENST00000551492 NPAS3-005 32934933-33801109 protein_coding
  ENST00000551634 NPAS3-007 32934933-33801103 protein_coding
  ENST00000552696 NPAS3-012 33560185-33585979 nonsense_mediated_decay
  ENST00000552874 NPAS3-015 33735241-33780871 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000346562ENST00000356141ENST00000357798ENST00000546849ENST00000547068ENST00000548645ENST00000549770ENST00000551008ENST00000551634ENST00000552874
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000346562 0.177±0.00 0.147±0.00 1.723±0.05 N/A 0.127±0.00 N/A N/A 0.068±0.04 0.164±0.00 0.046±0.00 0.132±0.12 N/A 0.226±0.00
ENST00000356141 N/A N/A 1.951±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.225±0.00
ENST00000357798 N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A 0.103±0.00 N/A 0.187±0.00
ENST00000546849 N/A N/A N/A N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A N/A N/A
ENST00000547068 N/A 0.231±0.00 N/A 0.132±0.00 N/A N/A N/A N/A 0.054±0.00 0.015±0.00 N/A N/A N/A
ENST00000548645 N/A N/A N/A 0.441±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549770 N/A 1.077±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.064±0.00 N/A N/A
ENST00000551008 N/A N/A N/A 0.274±0.00 N/A N/A N/A N/A N/A N/A 0.245±0.00 N/A N/A
ENST00000551634 N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A 0.097±0.00 0.010±0.00 0.413±0.00 0.248±0.00
ENST00000552874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RB CIL_0005RB_0002 CGP 14:32329273-33804176
CIL_0007M4 CIL_0007M4_0001 UCNEbase 14:32599473-34309899
CIL_0005RA CIL_0005RA_0002 CGP 14:32934933-34462774

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001964 IEA startle response
GO:0003677 IEA DNA binding
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007626 IEA locomotory behavior
GO:0042711 IEA maternal behavior
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079182 NPAS3 neuronal PAS domain protein 3 protein_coding Danio_rerio
ENSMUSG00000021010 Npas3 neuronal PAS domain protein 3 protein_coding Mus_musculus

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