C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel and clathrin linker 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000151466 SCLT1 9606 - 4:128864921-129093607 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000281142 SCLT1-001 128883993-129093607 protein_coding
  ENST00000439369 SCLT1-004 128884346-129093410 protein_coding
  ENST00000502495 SCLT1-007 128884390-128997285 processed_transcript
  ENST00000503215 SCLT1-005 128884346-129093412 protein_coding
  ENST00000503401 SCLT1-002 129039230-129093563 protein_coding
  ENST00000503565 SCLT1-009 128864921-128936704 processed_transcript
  ENST00000506233 SCLT1-006 128883997-128972372 retained_intron
  ENST00000506368 SCLT1-008 129036595-129093377 protein_coding
  ENST00000511426 SCLT1-003 129039193-129093545 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000281142ENST00000503215
Transcript ID Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000281142 2.005±0.00 2.188±0.00 N/A 2.670±0.00 2.887±0.00 N/A 2.578±0.51 2.627±0.00 3.856±0.00
ENST00000503215 4.773±0.00 N/A 1.197±0.00 N/A N/A 1.032±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001N CIL_00001N_0001 CGP 4:128269237-128875224
CIL_00001M CIL_00001M_0001 CGP 4:128809623-129093607
CIL_0006YI CIL_0006YI_0002 CGP 4:128864921-129116640

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0008022 IEA protein C-terminus binding
GO:0015630 IDA microtubule cytoskeleton
GO:0017080 IEA sodium channel regulator activity
GO:0030276 IEA clathrin binding
GO:0042384 IMP cilium assembly
GO:0045162 IEA clustering of voltage-gated sodium channels
GO:0070062 IDA extracellular vesicular exosome
GO:0071439 IEA clathrin complex
GO:0097539 IDA ciliary transition fiber

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057248 sclt1 sodium channel and clathrin linker 1 protein_coding Danio_rerio
ENSMUSG00000059834 Sclt1 sodium channel and clathrin linker 1 protein_coding Mus_musculus

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