C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing regulatory glutamine/lysine-rich protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153914 SREK1 9606 + 5:66139971-66183615 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284041 SREK1-009 66158127-66180811 processed_transcript
  ENST00000334121 SREK1-001 66144218-66183615 protein_coding
  ENST00000380918 SREK1-002 66144835-66179114 protein_coding
  ENST00000518110 SREK1-011 66158700-66162236 retained_intron
  ENST00000519205 SREK1-014 66177327-66178939 retained_intron
  ENST00000519259 SREK1-007 66163583-66180879 retained_intron
  ENST00000520058 SREK1-010 66144307-66153790 retained_intron
  ENST00000520580 SREK1-006 66159106-66170815 retained_intron
  ENST00000520953 SREK1-004 66144315-66179179 nonsense_mediated_decay
  ENST00000521691 SREK1-003 66139971-66162273 protein_coding
  ENST00000522214 SREK1-013 66174624-66179037 retained_intron
  ENST00000522912 SREK1-005 66144315-66178857 nonsense_mediated_decay
  ENST00000523655 SREK1-012 66163792-66170649 nonsense_mediated_decay
  ENST00000523851 SREK1-008 66144264-66153723 processed_transcript
  ENST00000524111 SREK1-016 66144336-66170628 retained_intron
  ENST00000612404 SREK1-201 66144218-66157738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284041ENST00000334121ENST00000519259ENST00000520953ENST00000522912ENST00000524111ENST00000612404
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284041 4.768±0.00 5.346±0.00 N/A 1.278±0.00 7.171±0.00 6.351±0.00 3.210±0.00 10.162±0.00 2.272±0.00 4.375±0.00 3.391±0.00 5.341±0.97 2.838±0.89 7.516±0.87
ENST00000334121 N/A 1.318±0.00 N/A 0.652±0.09 1.602±0.00 1.712±0.00 0.706±0.00 1.120±0.22 0.470±0.00 1.564±0.00 0.425±0.00 1.642±0.53 0.715±0.14 1.943±0.00
ENST00000519259 0.537±0.00 1.661±0.00 1.433±0.00 0.608±0.18 1.011±0.00 1.410±0.00 0.378±0.04 0.547±0.00 0.687±0.50 2.776±0.00 N/A 0.980±0.48 N/A 2.238±0.00
ENST00000520953 4.013±0.00 5.278±0.00 N/A 4.231±0.00 N/A N/A N/A N/A N/A N/A N/A 7.501±0.00 N/A 5.659±0.12
ENST00000522912 N/A N/A 6.500±0.00 1.256±0.00 N/A 4.634±0.00 0.533±0.00 N/A 3.014±0.00 N/A 2.042±0.00 2.746±0.00 4.213±0.00 8.405±0.00
ENST00000524111 N/A N/A N/A 1.967±0.00 3.188±0.00 3.081±0.00 0.997±0.00 3.035±0.00 N/A 7.890±0.00 N/A 3.614±0.00 N/A N/A
ENST00000612404 N/A N/A 12.055±0.00 N/A 9.139±0.00 8.977±0.00 3.519±0.00 5.633±0.00 10.328±0.00 19.733±0.00 1.016±0.00 9.338±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005739 IDA mitochondrion
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009764 srek1 splicing regulatory glutamine/lysine-rich protein 1 protein_coding Danio_rerio
ENSMUSG00000032621 Srek1 splicing regulatory glutamine/lysine-rich protein 1 protein_coding Mus_musculus

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