C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nei endonuclease VIII-like 2 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154328 NEIL2 9606 + 8:11769639-11787346 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284503 NEIL2-001 11769739-11787346 protein_coding
  ENST00000403422 NEIL2-007 11769709-11787345 protein_coding
  ENST00000436750 NEIL2-004 11769639-11787345 protein_coding
  ENST00000455213 NEIL2-003 11769699-11787340 protein_coding
  ENST00000524741 NEIL2-009 11782612-11786656 retained_intron
  ENST00000528113 NEIL2-005 11769710-11786097 nonsense_mediated_decay
  ENST00000528323 NEIL2-002 11769710-11786374 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284503ENST00000403422ENST00000436750ENST00000455213ENST00000524741ENST00000528113ENST00000528323
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284503 2.716±0.00 2.951±0.00 0.190±0.00 N/A 3.291±0.00 1.214±0.00 3.527±0.00 N/A 0.547±0.06 1.266±1.03 1.808±0.15 2.368±1.79 1.045±0.08 N/A
ENST00000403422 2.856±0.00 7.457±0.00 1.035±0.00 6.313±5.49 10.780±0.00 3.125±1.61 N/A 5.583±0.00 3.996±0.00 2.404±0.00 1.504±0.00 2.124±1.25 2.903±0.00 14.196±7.31
ENST00000436750 1.992±0.00 1.983±0.00 N/A 2.621±0.99 1.641±0.76 N/A 0.615±0.37 N/A 1.473±0.00 1.417±0.86 6.443±0.00 4.493±2.04 3.593±1.34 9.158±0.00
ENST00000455213 N/A N/A N/A 1.398±0.00 N/A N/A 0.233±0.00 3.250±0.00 1.133±0.00 0.886±0.67 1.359±0.00 N/A N/A 5.336±0.00
ENST00000524741 N/A N/A N/A N/A 0.762±0.00 N/A N/A N/A N/A 1.126±0.00 N/A 0.420±0.00 N/A N/A
ENST00000528113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.296±0.00 N/A N/A
ENST00000528323 N/A N/A N/A N/A N/A N/A N/A 1.550±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Y4 CIL_0008Y4_0001 VISTA 8:11271783-11873892
CIL_000919 CIL_000919_0001 VISTA 8:11446673-12047186
CIL_0007PQ CIL_0007PQ_0001 VISTA 8:11649159-12249913

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003676 IEA nucleic acid binding
GO:0003684 IEA damaged DNA binding
GO:0003906 IEA DNA-(apurinic or apyrimidinic site) lyase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005876 IEA spindle microtubule
GO:0006281 IEA DNA repair
GO:0006284 IEA base-excision repair
GO:0006289 IEA nucleotide-excision repair
GO:0008017 IEA microtubule binding
GO:0008270 IEA zinc ion binding
GO:0015630 IEA microtubule cytoskeleton
GO:0016799 IEA hydrolase activity, hydrolyzing N-glycosyl compounds

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020079 neil3 nei endonuclease VIII-like 3 (E. coli) protein_coding Danio_rerio
ENSMUSG00000035121 Neil2 nei like 2 (E. coli) protein_coding Mus_musculus

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