C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 25
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155313 USP25 9606 + 21:15730025-15880069 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000285679 USP25-002 15730025-15878911 protein_coding
  ENST00000285681 USP25-001 15730025-15880058 protein_coding
  ENST00000351097 USP25-003 15730025-15878911 protein_coding
  ENST00000400183 USP25-201 15730025-15880069 protein_coding
  ENST00000449491 USP25-006 15842518-15874518 protein_coding
  ENST00000453553 USP25-005 15825010-15833379 protein_coding
  ENST00000464435 USP25-007 15799534-15805655 retained_intron
  ENST00000478932 USP25-004 15875996-15878911 retained_intron
  ENST00000547201 USP25-008 15773256-15818729 processed_transcript
  ENST00000549362 USP25-009 15773256-15818729 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000285679ENST00000285681ENST00000351097ENST00000400183ENST00000478932
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000285679 9.658±0.00 7.252±0.00 3.540±0.00 8.524±0.64 9.337±0.00 5.491±1.44 6.320±3.39 5.943±2.24 5.512±2.61 8.593±1.18 15.673±9.34 7.533±3.29 9.944±7.09 26.033±9.72
ENST00000285681 1.788±0.00 N/A N/A 1.115±0.00 1.329±0.38 1.208±0.00 N/A 0.611±0.00 1.786±0.00 1.681±0.85 N/A 0.703±0.00 1.016±0.00 1.688±0.00
ENST00000351097 N/A N/A 4.703±0.00 N/A 3.283±0.00 4.240±0.00 1.965±0.00 1.957±0.00 N/A N/A 5.156±0.00 3.859±0.00 N/A N/A
ENST00000400183 N/A N/A N/A N/A N/A 1.756±0.00 1.163±0.49 N/A N/A N/A 4.753±0.00 N/A N/A N/A
ENST00000478932 N/A N/A N/A N/A 3.269±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004843 IMP ubiquitin-specific protease activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006464 TAS cellular protein modification process
GO:0006508 TAS proteolysis
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008233 TAS peptidase activity
GO:0032183 IDA SUMO binding
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0070536 IMP protein K63-linked deubiquitination
GO:0071108 IMP protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012314 usp25 ubiquitin specific protease 25 protein_coding Danio_rerio
ENSMUSG00000022867 Usp25 ubiquitin specific peptidase 25 protein_coding Mus_musculus

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