C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: La ribonucleoprotein domain family, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155506 LARP1 9606 + 5:154712902-154817607 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336314 LARP1-001 154712902-154817607 protein_coding
  ENST00000517616 LARP1-011 154755985-154793649 protein_coding
  ENST00000518194 LARP1-010 154792774-154795186 protein_coding
  ENST00000518297 LARP1-002 154755575-154804208 protein_coding
  ENST00000518595 LARP1-013 154794046-154802078 retained_intron
  ENST00000518677 LARP1-005 154802350-154805113 protein_coding
  ENST00000518742 LARP1-014 154794210-154802083 protein_coding
  ENST00000518892 LARP1-007 154756003-154786684 protein_coding
  ENST00000519194 LARP1-015 154805754-154811351 retained_intron
  ENST00000519931 LARP1-009 154756411-154793824 protein_coding
  ENST00000521577 LARP1-008 154756174-154794195 nonsense_mediated_decay
  ENST00000522272 LARP1-006 154804221-154805240 protein_coding
  ENST00000523163 LARP1-012 154792733-154802009 protein_coding
  ENST00000524187 LARP1-016 154811388-154813920 retained_intron
  ENST00000524248 LARP1-003 154757174-154804208 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336314ENST00000518297
Transcript ID Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336314 32.154±0.00 12.958±0.00 N/A 13.777±0.00 4.815±0.00 3.647±0.00 0.974±0.00 16.921±16.87 7.419±0.00 3.348±0.00
ENST00000518297 N/A N/A 1.551±0.00 N/A 4.211±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099I CIL_00099I_0001 VISTA 5:154192067-154792416
CIL_00088D CIL_00088D_0001 VISTA 5:154298500-154906275
CIL_00023W CIL_00023W_0001 CGP 5:154474972-154817607

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000339 IDA RNA cap binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006413 IMP translational initiation
GO:0008190 IPI eukaryotic initiation factor 4E binding
GO:0008283 IMP cell proliferation
GO:0008494 IMP translation activator activity
GO:0016020 IDA membrane
GO:0016239 IMP positive regulation of macroautophagy
GO:0031369 IDA translation initiation factor binding
GO:0031929 IMP TOR signaling
GO:0031931 IDA TORC1 complex
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IMP positive regulation of translation
GO:0048027 IDA mRNA 5'-UTR binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018434 larp1 La ribonucleoprotein domain family, member 1 protein_coding Danio_rerio
ENSMUSG00000037331 Larp1 La ribonucleoprotein domain family, member 1 protein_coding Mus_musculus

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