C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 45
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155636 RBM45 9606 + 2:178112424-178139011 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000286070 RBM45-001 178112455-178129656 protein_coding
  ENST00000424000 RBM45-002 178112424-178129656 retained_intron
  ENST00000424099 RBM45-006 178125725-178129656 protein_coding
  ENST00000455903 RBM45-004 178123863-178139011 protein_coding
  ENST00000464647 RBM45-005 178126139-178136776 processed_transcript
  ENST00000493048 RBM45-003 178121004-178124290 retained_intron
  ENST00000616198 RBM45-201 178112455-178129653 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286070ENST00000424000ENST00000424099ENST00000455903ENST00000493048ENST00000616198
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286070 1.777±0.00 2.421±0.00 1.002±0.00 1.945±0.00 1.810±0.00 1.306±0.00 0.706±0.39 0.933±0.12 1.526±0.00 0.938±0.46 0.205±0.10 1.691±0.97 1.503±0.46 2.546±1.03
ENST00000424000 N/A N/A N/A N/A N/A N/A N/A 0.740±0.00 N/A N/A N/A 0.498±0.00 N/A N/A
ENST00000424099 N/A 4.257±0.00 N/A N/A 2.325±0.00 N/A N/A N/A 1.873±0.00 0.882±0.00 0.139±0.00 5.160±2.34 3.127±1.95 8.253±0.00
ENST00000455903 N/A 0.392±0.00 0.432±0.00 0.318±0.00 N/A 0.097±0.00 0.086±0.00 N/A 0.186±0.00 0.066±0.00 N/A 0.458±0.05 N/A 0.332±0.00
ENST00000493048 N/A N/A N/A N/A N/A N/A 0.577±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000616198 N/A N/A N/A N/A N/A N/A 0.784±0.00 0.940±0.00 N/A N/A 0.097±0.00 0.826±0.00 0.600±0.00 0.973±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Z2 CIL_0000Z2_0001 CGP 2:178112424-178399433

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007399 ISS nervous system development
GO:0030154 IEA cell differentiation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063731 rbm45 RNA binding motif protein 45 protein_coding Danio_rerio
ENSMUSG00000042369 Rbm45 RNA binding motif protein 45 protein_coding Mus_musculus

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