C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tudor domain containing 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156414 TDRD9 9606 + 14:103928462-104052667 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339063 TDRD9-201 103970607-104052212 protein_coding
  ENST00000409874 TDRD9-001 103928462-104052667 protein_coding
  ENST00000462273 TDRD9-003 104049418-104052665 retained_intron
  ENST00000466378 TDRD9-005 104005156-104007180 retained_intron
  ENST00000481318 TDRD9-006 104049425-104052281 retained_intron
  ENST00000496087 TDRD9-004 103928817-103965481 processed_transcript
  ENST00000554571 TDRD9-008 103939800-103966828 processed_transcript
  ENST00000557332 TDRD9-007 103970597-104052665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339063ENST00000409874ENST00000462273ENST00000466378ENST00000481318ENST00000554571ENST00000557332
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339063 0.056±0.00 0.172±0.00 N/A 0.324±0.00 N/A 0.064±0.00 0.092±0.00 0.463±0.00 N/A N/A N/A 0.068±0.00 0.267±0.00 9.997±5.41
ENST00000409874 0.183±0.00 N/A 0.165±0.00 0.097±0.01 0.035±0.00 N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A 14.910±8.20
ENST00000462273 N/A N/A N/A 0.975±0.53 N/A N/A 0.862±0.00 1.299±0.00 N/A N/A N/A N/A 0.105±0.00 N/A
ENST00000466378 N/A N/A N/A 0.616±0.00 0.983±0.00 0.369±0.24 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481318 N/A N/A N/A 0.804±0.00 N/A 0.098±0.01 0.530±0.30 N/A N/A 0.127±0.00 N/A 0.087±0.00 0.244±0.00 N/A
ENST00000554571 N/A 0.382±0.00 N/A N/A N/A N/A N/A N/A 0.467±0.00 N/A 0.184±0.00 0.705±0.50 N/A N/A
ENST00000557332 N/A N/A N/A 0.039±0.00 N/A N/A 0.114±0.01 N/A 0.030±0.00 0.090±0.00 N/A 0.049±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006X8 CIL_0006X8_0001 CGP 14:103912288-104052667
CIL_0006X7 CIL_0006X7_0001 CGP 14:103928462-104052667

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004386 IEA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0007140 ISS male meiosis
GO:0007275 IEA multicellular organismal development
GO:0007283 ISS spermatogenesis
GO:0009566 ISS fertilization
GO:0030154 IEA cell differentiation
GO:0031047 IEA gene silencing by RNA
GO:0034587 ISS piRNA metabolic process
GO:0043046 ISS DNA methylation involved in gamete generation
GO:0071547 ISS piP-body

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013453 tdrd9 tudor domain containing 9 protein_coding Danio_rerio
ENSMUSG00000054003 Tdrd9 tudor domain containing 9 protein_coding Mus_musculus

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