C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sterile alpha motif domain containing 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156671 SAMD8 9606 + 10:75099586-75182123 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372687 SAMD8-001 75111709-75182123 protein_coding
  ENST00000372690 SAMD8-002 75111471-75176831 protein_coding
  ENST00000447533 SAMD8-003 75099586-75168627 protein_coding
  ENST00000542569 SAMD8-201 75111635-75182123 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372687ENST00000372690ENST00000447533ENST00000542569
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372687 N/A 0.912±0.00 N/A N/A 1.452±0.63 0.475±0.06 N/A 0.588±0.00 1.075±0.00 0.776±0.00 N/A 2.691±0.00 0.422±0.00 0.800±0.00
ENST00000372690 N/A N/A 3.422±0.00 9.907±0.00 6.029±0.00 5.565±0.00 5.149±0.00 1.295±0.00 8.394±0.00 6.089±0.00 10.729±0.00 8.687±0.00 N/A N/A
ENST00000447533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.424±0.00
ENST00000542569 10.806±0.00 2.689±0.00 N/A 8.501±3.56 3.163±2.01 3.275±0.00 4.821±0.00 1.827±0.74 1.296±0.00 1.474±0.30 5.819±4.74 3.284±1.71 2.168±0.68 5.726±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JX CIL_0007JX_0001 UCNEbase 10:74418410-76978156
CIL_0008UO CIL_0008UO_0001 VISTA 10:74941035-75542526
CIL_000925 CIL_000925_0001 VISTA 10:74961440-75563087
CIL_0006DL CIL_0006DL_0002 CGP 10:75037836-75109221
CIL_00084B CIL_00084B_0001 VISTA 10:75078488-75679926
CIL_0007IJ CIL_0007IJ_0001 CGP 10:75094432-75182123
CIL_0007IK CIL_0007IK_0001 CGP 10:75099586-75231448

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0006686 NAS sphingomyelin biosynthetic process
GO:0016021 NAS integral component of membrane
GO:0016740 IEA transferase activity
GO:0030176 IDA integral component of endoplasmic reticulum membrane
GO:0046513 IDA ceramide biosynthetic process
GO:2000303 IDA regulation of ceramide biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076184 SAMD8 sterile alpha motif domain containing 8 protein_coding Danio_rerio
ENSMUSG00000021770 Samd8 sterile alpha motif domain containing 8 protein_coding Mus_musculus

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