C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single stranded DNA binding protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157216 SSBP3 9606 - 1:54225432-54413479 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326956 SSBP3-012 54225432-54356818 processed_transcript
  ENST00000357475 SSBP3-001 54226920-54406223 protein_coding
  ENST00000371319 SSBP3-007 54226639-54406008 protein_coding
  ENST00000371320 SSBP3-002 54226632-54406419 protein_coding
  ENST00000417664 SSBP3-013 54226632-54405504 protein_coding
  ENST00000420121 SSBP3-006 54239096-54257266 retained_intron
  ENST00000426150 SSBP3-004 54228255-54325439 processed_transcript
  ENST00000444533 SSBP3-005 54238989-54251860 protein_coding
  ENST00000448572 SSBP3-015 54412708-54413466 processed_transcript
  ENST00000525990 SSBP3-014 54243237-54413479 protein_coding
  ENST00000528787 SSBP3-009 54243272-54335881 processed_transcript
  ENST00000528930 SSBP3-010 54226517-54228834 retained_intron
  ENST00000530618 SSBP3-003 54242856-54251671 retained_intron
  ENST00000533209 SSBP3-008 54243189-54326472 retained_intron
  ENST00000533946 SSBP3-011 54226647-54404633 processed_transcript
  ENST00000610401 SSBP3-201 54225433-54406395 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326956ENST00000371319ENST00000426150ENST00000610401
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326956 N/A N/A N/A N/A N/A 0.902±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000371319 N/A N/A N/A N/A N/A N/A N/A N/A 3.145±0.00 N/A 10.042±0.00 15.641±3.66 11.817±0.00
ENST00000426150 N/A N/A N/A N/A 9.265±0.00 N/A N/A N/A N/A N/A 24.199±17.32 55.906±0.00 51.862±0.00
ENST00000610401 7.000±0.00 6.468±0.00 49.374±0.00 8.522±0.00 7.103±5.26 16.271±0.00 11.539±0.00 4.062±3.02 12.455±0.00 13.889±0.00 33.983±17.80 9.826±3.10 12.736±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085J CIL_00085J_0001 VISTA 1:54159373-54763153
CIL_0006W6 CIL_0006W6_0002 CGP 1:54184041-54413479
CIL_00005A CIL_00005A_0002 CGP 1:54225432-54639192

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006461 IEA protein complex assembly
GO:0008284 IEA positive regulation of cell proliferation
GO:0021501 IEA prechordal plate formation
GO:0021547 IEA midbrain-hindbrain boundary initiation
GO:0043234 IEA protein complex
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060322 IEA head development
GO:0060323 IEA head morphogenesis
GO:2000744 IEA positive regulation of anterior head development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030155 ssbp3b single stranded DNA binding protein 3b protein_coding Danio_rerio
ENSDARG00000058237 ssbp3a single stranded DNA binding protein 3a protein_coding Danio_rerio
ENSMUSG00000061887 Ssbp3 single-stranded DNA binding protein 3 protein_coding Mus_musculus

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