C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium channel, voltage-dependent, alpha 2/delta subunit 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157445 CACNA2D3 9606 + 3:54122547-55074557 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000288197 CACNA2D3-201 54122666-55074553 protein_coding
  ENST00000415676 CACNA2D3-202 54122547-55074473 protein_coding
  ENST00000468658 CACNA2D3-005 54197371-54885586 nonsense_mediated_decay
  ENST00000471363 CACNA2D3-003 54123461-55074557 nonsense_mediated_decay
  ENST00000471865 CACNA2D3-008 55007776-55074203 retained_intron
  ENST00000474759 CACNA2D3-001 54122666-55074557 protein_coding
  ENST00000477024 CACNA2D3-004 54123479-54888024 nonsense_mediated_decay
  ENST00000478261 CACNA2D3-009 54987678-55074216 processed_transcript
  ENST00000478466 CACNA2D3-007 54272774-54320541 processed_transcript
  ENST00000490478 CACNA2D3-002 54123461-55074557 protein_coding
  ENST00000492460 CACNA2D3-006 54177796-54562915 protein_coding
  ENST00000620722 CACNA2D3-203 54123461-55074376 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000468658ENST00000471363ENST00000471865ENST00000474759ENST00000477024ENST00000478261ENST00000490478ENST00000492460ENST00000620722
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000468658 N/A N/A N/A N/A N/A 0.401±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471363 N/A 0.450±0.00 N/A N/A N/A N/A N/A 0.204±0.00 N/A N/A 0.399±0.00 0.931±0.19 0.416±0.02 0.347±0.00
ENST00000471865 N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A
ENST00000474759 N/A N/A N/A 6.959±0.00 N/A N/A N/A 0.822±0.00 N/A 0.423±0.00 N/A 0.295±0.00 0.191±0.00 N/A
ENST00000477024 0.055±0.00 N/A N/A 3.391±0.00 0.162±0.00 1.037±0.00 2.526±1.40 0.663±0.00 0.318±0.00 0.752±0.00 1.587±0.22 0.388±0.00 N/A 0.994±0.00
ENST00000478261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.00 N/A N/A
ENST00000490478 N/A N/A N/A 7.680±0.00 N/A N/A 0.336±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000492460 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.033±0.00 N/A N/A N/A N/A
ENST00000620722 0.117±0.00 N/A 1.057±0.00 N/A 0.217±0.12 0.255±0.00 N/A N/A 0.291±0.00 N/A 1.015±0.00 0.058±0.00 0.583±0.00 1.355±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001F9 CIL_0001F9_0002 CGP 3:54122547-55074557

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005245 IEA voltage-gated calcium channel activity
GO:0006816 IEA calcium ion transport
GO:0016021 IEA integral component of membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045204 CACNA2D3 (1 of 2) calcium channel, voltage-dependent, alpha 2/delta subunit 3 protein_coding Danio_rerio
ENSDARG00000078760 cacna2d3 calcium channel, voltage dependent, alpha2/delta subunit 3 protein_coding Danio_rerio
ENSMUSG00000021991 Cacna2d3 calcium channel, voltage-dependent, alpha2/delta subunit 3 protein_coding Mus_musculus

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