C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000158079 PTPDC1 9606 + 9:94030794-94109856 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000288976 PTPDC1-002 94084464-94109854 protein_coding
  ENST00000375360 PTPDC1-001 94030794-94109856 protein_coding
  ENST00000467049 PTPDC1-003 94100087-94107912 processed_transcript
  ENST00000620992 PTPDC1-201 94084429-94109852 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000288976ENST00000375360ENST00000467049
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000288976 N/A 0.510±0.00 4.338±0.00 0.401±0.00 N/A N/A N/A 0.240±0.00 N/A 0.281±0.00 0.395±0.00 N/A 2.112±0.00
ENST00000375360 1.157±0.00 N/A 0.678±0.00 0.484±0.00 0.888±0.00 1.269±0.31 1.339±0.00 0.197±0.00 1.294±0.21 1.163±0.00 1.505±0.47 0.438±0.13 4.006±0.03
ENST00000467049 N/A N/A N/A 0.854±0.00 1.560±0.00 N/A N/A 1.220±0.00 N/A 0.150±0.00 1.905±0.00 0.141±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WO CIL_0008WO_0001 VISTA 9:93563376-94165036
CIL_0008XX CIL_0008XX_0001 VISTA 9:93838844-94440653

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0006470 IEA protein dephosphorylation
GO:0007224 IEA smoothened signaling pathway
GO:0008138 IEA protein tyrosine/serine/threonine phosphatase activity
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0060271 IEA cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058873 PTPDC1 (1 of 2) protein tyrosine phosphatase domain containing 1 protein_coding Danio_rerio
ENSDARG00000061656 ptpdc1 protein tyrosine phosphatase domain containing 1 protein_coding Danio_rerio
ENSMUSG00000038042 Ptpdc1 protein tyrosine phosphatase domain containing 1 protein_coding Mus_musculus

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