C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CCR4-NOT transcription complex, subunit 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000158435 CNOT11 9606 + 2:101252802-101270316 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000289382 CNOT11-001 101252802-101270316 protein_coding
  ENST00000420107 CNOT11-003 101264975-101269315 protein_coding
  ENST00000462489 CNOT11-002 101262431-101266784 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000289382
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000289382 9.067±0.00 14.697±0.00 3.598±0.00 4.996±1.43 7.271±1.83 10.965±2.23 7.939±4.39 11.143±6.99 8.145±1.42 6.300±2.05 7.244±2.21 31.729±15.83 25.494±3.53 21.884±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TG CIL_0008TG_0001 VISTA 2:100809636-101413030
CIL_0004HF CIL_0004HF_0001 CGP 2:101001715-101252866
CIL_0004HG CIL_0004HG_0001 CGP 2:101007617-101270316
CIL_0004HD CIL_0004HD_0001 CGP 2:101252802-101308701

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 TAS nuclear-transcribed mRNA poly(A) tail shortening
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0008283 NAS cell proliferation
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0030014 IDA CCR4-NOT complex
GO:0031047 IEA gene silencing by RNA

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068596 cnot11 CCR4-NOT transcription complex, subunit 11 protein_coding Danio_rerio
ENSMUSG00000003135 Cnot11 CCR4-NOT transcription complex, subunit 11 protein_coding Mus_musculus

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